suba logo
AT1G49240.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28611809 (2017): cytosol
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24012629 (2013): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:17317660 (2007): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : actin 8
Curator
Summary (TAIR10)
Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves, roots, stems, flowers, pollen, and siliques. However, protein expression, assayed by a ACT8:GUS fusion reporter, is very low in pollen.
Computational
Description (TAIR10)
actin 8 (ACT8); FUNCTIONS IN: copper ion binding, structural constituent of cytoskeleton; INVOLVED IN: response to salt stress, root hair cell tip growth, cytoskeleton organization; LOCATED IN: plasma membrane, chloroplast, vacuole; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 2 (TAIR:AT3G18780.2); Has 15146 Blast hits to 14753 proteins in 3039 species: Archae - 6; Bacteria - 12; Metazoa - 5709; Fungi - 5217; Plants - 1599; Viruses - 2; Other Eukaryotes - 2601 (source: NCBI BLink).
Protein Annotations
BioGrid:26572eggNOG:COG5277eggNOG:KOG0676EMBL:AC016041EMBL:AF370302EMBL:AY063089EMBL:AY124004
EMBL:CP002684EMBL:U42007EMBL:Z17778EnsemblPlants:AT1G49240EnsemblPlants:AT1G49240.1entrez:841347GeneID:841347
Genevisible:Q96293GO:GO:0005507GO:GO:0005524GO:GO:0005773GO:GO:0005829GO:GO:0005856GO:GO:0005886
GO:GO:0009506GO:GO:0009507GO:GO:0009570GO:GO:0009651GO:GO:0009941GO:GO:0048768Gramene:AT1G49240.1
hmmpanther:PTHR11937hmmpanther:PTHR11937:SF247HOGENOM:HOG000233340InParanoid:Q96293IntAct:Q96293InterPro:IPR004000InterPro:IPR004001
InterPro:IPR020902KEGG:ath:AT1G49240KO:K10355OMA:GECPPSAPANTHER:PTHR11937PaxDb:Q96293Pfam:PF00022
Pfam:Q96293PhylomeDB:Q96293PRIDE:Q96293PRINTS:PR00190PRO:PR:Q96293PROSITE:PS00406PROSITE:PS00432
PROSITE:PS01132ProteinModelPortal:Q96293Proteomes:UP000006548RefSeq:NP_175350.1scanprosite:PS00406scanprosite:PS00432scanprosite:PS01132
SMART:SM00268SMR:Q96293STRING:3702.AT1G49240.1SUPFAM:SSF53067SWISS-2DPAGE:P99055TAIR:AT1G49240tair10-symbols:ACT8
UniGene:At.24689UniProt:Q96293
Coordinates (TAIR10) chr1:+:18216539..18217947
Molecular Weight (calculated) 41865.20 Da
IEP (calculated) 5.29
GRAVY (calculated) -0.18
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MADADDIQPI VCDNGTGMVK AGFAGDDAPR AVFPSVVGRP RHHGVMVGMN QKDAYVGDEA QSKRGILTLK YPIEHGVVSN WDDMEKIWHH TFYNELRIAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN SPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG FSLPHAILRL DLAGRDLTDY LMKILTERGY
201: MFTTTAEREI VRDIKEKLSF VAVDYEQEME TSKTSSSIEK NYELPDGQVI TIGAERFRCP EVLFQPSFVG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFSG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KAEYDEAGPG IVHRKCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)