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AT1G49230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49200.1); Has 9168 Blast hits to 9144 proteins in 279 species: Archae - 0; Bacteria - 0; Metazoa - 2452; Fungi - 610; Plants - 4926; Viruses - 41; Other Eukaryotes - 1139 (source: NCBI BLink).
Protein Annotations
BioGrid:26571eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC016041EMBL:AK176235EMBL:AK176512EMBL:BT010489
EMBL:CP002684EnsemblPlants:AT1G49230EnsemblPlants:AT1G49230.1entrez:841346Gene3D:3.30.40.10GeneID:841346Genevisible:Q6NQG7
GO:GO:0008270GO:GO:0016021GO:GO:0016567Gramene:AT1G49230.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF106HOGENOM:HOG000237642
InParanoid:Q6NQG7InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G49230KO:K19040OMA:FVTTNAIPaxDb:Q6NQG7
Pfam:PF13639Pfam:Q6NQG7Pfscan:PS50089PhylomeDB:Q6NQG7PIR:G96528PRO:PR:Q6NQG7PROSITE:PS50089
ProteinModelPortal:Q6NQG7Proteomes:UP000006548RefSeq:NP_175349.1SMART:SM00184SMR:Q6NQG7STRING:3702.AT1G49230.1SUPFAM:SSF57850
TAIR:AT1G49230TMHMM:TMhelixUniGene:At.43788UniPathway:UPA00143UniProt:Q6NQG7
Coordinates (TAIR10) chr1:+:18209320..18209979
Molecular Weight (calculated) 24287.30 Da
IEP (calculated) 7.32
GRAVY (calculated) -0.00
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MCTTISISIS TIKPTEIFQE ILGSSYSRKL LFHTHDQSPT PAPSPYVGDN NFDANVVMVL SVLLCALVCS LGLNSIIRCA LRCSNLVPSE AGGDNYPVRL
101: TNTGVKRKAL KSFQTVSYST ELNLPGLDTE CAICLSEFVA EERVKLLPTC HHGFHVRCID KWLSSHSSCP TCRHCLIQTC EKIADCSQTS SLNSTQPPQD
201: SIILQIAPLE PERWIRWFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)