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AT1G49210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.856
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49200.1); Has 8754 Blast hits to 8731 proteins in 271 species: Archae - 0; Bacteria - 0; Metazoa - 2313; Fungi - 505; Plants - 4805; Viruses - 45; Other Eukaryotes - 1086 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC016041EMBL:BT010932EMBL:BT011647EMBL:CP002684
EMBL:DQ086858EnsemblPlants:AT1G49210EnsemblPlants:AT1G49210.1entrez:841344Gene3D:3.30.40.10GeneID:841344Genevisible:Q6NML0
GO:GO:0004842GO:GO:0008270GO:GO:0016021GO:GO:0016567GO:GO:0016874Gramene:AT1G49210.1hmmpanther:PTHR14155
hmmpanther:PTHR14155:SF106HOGENOM:HOG000237642InParanoid:Q6NML0InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G49210KO:K19040
OMA:CAFRRSSPaxDb:Q6NML0Pfam:PF13639Pfam:Q6NML0Pfscan:PS50089PhylomeDB:Q6NML0PRIDE:Q6NML0
PRO:PR:Q6NML0PROSITE:PS50089ProteinModelPortal:Q6NML0Proteomes:UP000006548RefSeq:NP_175347.1SMART:SM00184SMR:Q6NML0
STRING:3702.AT1G49210.1SUPFAM:SSF57850TAIR:AT1G49210TMHMM:TMhelixUniGene:At.38277UniPathway:UPA00143UniProt:Q6NML0
Coordinates (TAIR10) chr1:+:18201994..18202671
Molecular Weight (calculated) 25185.80 Da
IEP (calculated) 8.31
GRAVY (calculated) 0.00
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MSANELPASA QSLQEQFLGS FVTRKLLLHD PFDHNSLRVF AVAPSPLITH ENNLKGNVLM LLSVLICGII CCLGLHYIIR CAFRRSSRFM ISEPISSLST
101: PRSSSNKGIK KKALRMFPVV SYSREMNLPG IGEECVICLS DFVSGEQLRL LPKCNHGFHV RCIDKWLQHH LTCPKCRHCL VETCQKILGD FSQADSMAST
201: PTESVIVRID PLEPEGRVNT FRESS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)