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AT1G49200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.835
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G49220.1); Has 8744 Blast hits to 8720 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2273; Fungi - 539; Plants - 4805; Viruses - 46; Other Eukaryotes - 1081 (source: NCBI BLink).
Protein Annotations
BioGrid:26568eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC016041
EMBL:AY039551EMBL:AY093753EMBL:CP002684EnsemblPlants:AT1G49200
EnsemblPlants:AT1G49200.1entrez:841343Gene3D:3.30.40.10GeneID:841343
Genevisible:Q94BY6GO:GO:0008270GO:GO:0016021GO:GO:0016567
Gramene:AT1G49200.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF106HOGENOM:HOG000237642
InParanoid:Q94BY6InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G49200
KO:K19040OMA:CAFRRTSPaxDb:Q94BY6Pfam:PF13639
Pfam:Q94BY6Pfscan:PS50089PhylomeDB:Q94BY6PRIDE:Q94BY6
PRO:PR:Q94BY6PROSITE:PS50089ProteinModelPortal:Q94BY6Proteomes:UP000006548
RefSeq:NP_175346.1SMART:SM00184SMR:Q94BY6STRING:3702.AT1G49200.1
SUPFAM:SSF57850TAIR:AT1G49200TMHMM:TMhelixUniGene:At.26144
UniPathway:UPA00143UniProt:Q94BY6
Coordinates (TAIR10) chr1:+:18198298..18198978
Molecular Weight (calculated) 24791.40 Da
IEP (calculated) 7.99
GRAVY (calculated) 0.14
Length 226 amino acids
Sequence (TAIR10)
(BLAST)
001: MAANELASSS VQAFQEQSLG GFVSRKLLLH NPFDHNTQRA FAVAPSPLIT HENNLSGNVL MLLSVLICGI ICCLGLHYII RCAFRRTSSF MISEPIAGLS
101: TPCGSSNKGI NKKALRMFPV VSYSPEMNLP GLGEECVICL SDFVSGEQIR MLPKCHHGFH VRCIDKWLQQ HLTCPKCRHC LVETCQKILG DFSQADQVAA
201: TPTASVIVRI APLEPEGRVN ILRESS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)