AT1G49100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G21340.1); Has 161236 Blast hits to 124165 proteins in 4737 species: Archae - 101; Bacteria - 13580; Metazoa - 45256; Fungi - 10232; Plants - 72553; Viruses - 452; Other Eukaryotes - 19062 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18166147..18170105 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98872.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 888 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKYFHGVLC VFIITVAFIH VVQAQDPNGF ITLDCGLLPD GSPYTNPSTG LTFTSDSSFI ESGKNGRVSK DSERNFEKAF VTLRYFPDGE RNCYNLNVTQ 101: GTNYLIRAAF LYGNYDGLNT VPNFDLFIGP NKVTTVNFNA TGGGVFVEII HMSRSTPLDI CLVKTGTTTP MISTLELRPL RSDTYISAIG SSLLLYFRGY 201: LNDSGVVLRY PDDVNDRRWF PFSYKEWKIV TTTLNVNTSN GFDLPQGAMA SAATRVNDNG TWEFPWSLED STTRFHIYLH FAELQTLLAN ETREFNVLLN 301: GKVYYGPYSP KMLSIDTMSP QPDSTLTCKG GSCLLQLVKT TKSTLPPLIN AIELFTVVEF PQSETNQDEV IAIKKIQLTY GLSRINWQGD PCVPEQFLWA 401: GLKCSNINSS TPPTITFLNL SSSGLTGIIS PSIQNLTHLQ ELDLSNNDLT GDVPEFLADI KSLLIINLSG NNFSGQLPQK LIDKKRLKLN VEGNPKLLCT 501: KGPCGNKPGE GGHPKKSIIV PVVSSVALIA ILIAALVLFL VLRKKNPSRS KENGRTSRSS EPPRITKKKK FTYVEVTEMT NNFRSVLGKG GFGMVYHGYV 601: NGREQVAVKV LSHASKHGHK QFKAEVELLL RVHHKNLVSL VGYCEKGKEL ALVYEYMANG DLKEFFSGKR GDDVLRWETR LQIAVEAAQG LEYLHKGCRP 701: PIVHRDVKTA NILLDEHFQA KLADFGLSRS FLNEGESHVS TVVAGTIGYL DPEYYRTNWL TEKSDVYSFG VVLLEIITNQ RVIERTREKP HIAEWVNLMI 801: TKGDIRKIVD PNLKGDYHSD SVWKFVELAM TCVNDSSATR PTMTQVVTEL TECVTLENSR GGKSQNMGST SSSEVTMTFD TEVNPVAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)