AT1G49040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : stomatal cytokinesis defective / SCD1 protein (SCD1) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
STOMATAL CYTOKINESIS-DEFECTIVE 1 (SCD1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), dDENN (InterPro:IPR005112), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), uDENN (InterPro:IPR005113), WD40 repeat-like-containing domain (InterPro:IPR011046), DENN (InterPro:IPR001194), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.2); Has 71080 Blast hits to 32273 proteins in 828 species: Archae - 56; Bacteria - 8068; Metazoa - 28161; Fungi - 15613; Plants - 9829; Viruses - 0; Other Eukaryotes - 9353 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18139419..18148826 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 131600.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1187 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGRIFEYFVV CGLGPEMRTV DGDLGFHGMQ TFYLPALLDQ FPPTDQSPYP APPPQLPTCV LPAGVEFHSS GFVSSDPASF PRSYPIVLTE GDGSKIFVSC 0101: IAFRDRVCED IIEAYRLPPN TYADKCICLV SHAPNFRVLR NSLEEIFVLC FSSEGSCKPL WDIIAYMVSN VPLPTPGKDR VLFAVENCLL SVEAPPEDSL 0201: PQADISLQPL VQCLDVDNLI KLFTSVLVER RILIRSNKYS LLTLVSESIC HLIYPFRWLQ VYIPLLFFSG VDYIDAPTPY MMGLHSDVDT SNLAMDGVVV 0301: VDLDINQITT SEEIPQIPEP EFSTLRNDIL KLLHPNVVAI DQLKGFGNSV EQCPKSLSKP WGEDHDLQLR VIFLKCFASI LGGYRNFIEN KVFSTDAFLK 0401: RRSRSTNQPP EPMLVQFLGS FAFLDYLERR LSSDEKSTNL LEKLQDAVGR GQDAMSILPK SSMEPEIITI AEPEVEESAT RYTYDRFPAS VRSEEQEEKR 0501: KQILAAASGA LESNGRHPPS SPPGKNTKED NFSSMERAAE RERMVLDIQV KLQGLWLRLL KLGSDEDPLS SFEYGTILAL IESDAEGIGG SGFIECIREH 0601: LYSGWHGQLS EEQFIAVKEL LKMAVGRAAS RSDLSTVRDA LEVSAEMFKK DANNVSDYVQ RHLISIPIWE ELRFWEGYFE YLMEQPANES VNYATLVTAR 0701: LIIVASHMAG LGLPDTEAWN MIETIAEKQK LGYKLLIKLR GFLSHVQQLR VGYWGASSFK QQAISAGLPS PRPKDVSVSD ETQQPSEASG RSWVQSMFSR 0801: DTASRANSFS RVRKWVSDNA SSDITAAAQK KIQTNVRVLK GHGGAVTALH SVTRREVCDL VGDREDAGFF ISGSTDCLVK IWDPSLRGSE LRATLKGHTG 0901: TVRAISSDRG KIVSGSDDLS VIVWDKQTTQ LLEELKGHDS QVSCVKMLSG ERVLTAAHDG TVKMWDVRTD MCVATVGRCS SAILSLEYDD STGILAAAGR 1001: DTVANIWDIR SGKQMHKLKG HTKWIRSIRM VEDTLITGSD DWTARVWSVS RGSCDAVLAC HAGPVQSVEY SPFDKGIITG SADGLLRFWE NDEGGIKCVK 1101: NITLHSSSIL SINAGENWLG IGAADNSMSL FHRPSNAGTK VSGWQLYRVP QRTAAVVRCV ASDLERKRIC SGGRNGVLRL WDATINI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)