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AT1G48950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : C3HC zinc finger-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C3HC zinc finger-like ; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC-like (InterPro:IPR012935); BEST Arabidopsis thaliana protein match is: IAP-like protein 1 (TAIR:AT1G17210.1); Has 249 Blast hits to 238 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 80; Plants - 75; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZQX4eggNOG:KOG4765EMBL:CP002684EnsemblPlants:AT1G48950EnsemblPlants:AT1G48950.1entrez:841317GeneID:841317
GO:GO:0005634GO:GO:0008270Gramene:AT1G48950.1hmmpanther:PTHR15835hmmpanther:PTHR15835:SF2InParanoid:F4I045InterPro:IPR012935
iPTMnet:F4I045KEGG:ath:AT1G48950OMA:LPYAVDCPaxDb:F4I045Pfam:PF07967PRIDE:F4I045ProteinModelPortal:F4I045
Proteomes:UP000006548RefSeq:NP_175325.2STRING:3702.AT1G48950.1TAIR:AT1G48950UniGene:At.38327UniProt:F4I045
Coordinates (TAIR10) chr1:+:18107063..18110108
Molecular Weight (calculated) 65236.80 Da
IEP (calculated) 7.93
GRAVY (calculated) -0.56
Length 594 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQDSEKRFH QIMDKLFTPS KSQLPSSSTS SSVEQQSRGK KRQNPSSALA LVEPKIVLAT IDRSSALKVP AGTSPSGLCR PWDRGDLMRR LATFKSMTWF
101: AKPQVISAVN CARRGWVNDD ADSIACESCG AHLYFSAPSS WSKQQVEKAA SVFSLKLESG HKLLCPWIEN SCEETLSEFP LMAPQDLVDR HEERSEALLQ
201: LLALPVISPS AIEYMRSSDL EEFLKRPIAP ACSDTAAESS QTESLTNHVG ASPAQLFYQA QKLISLCGWE PRALPYIVDC KDKLSETARG TETIDLLPET
301: ATRELLSISE STPIPNGISG NNENPTLPDT LNSDPSSVVL DCKLCGACVG LWVFSTVPRP LELCRVTGDT EINIEKHPKG GTLQHQPSSL KFTIAGGPPA
401: TKQNFKATIS LPIIGRNLRS RFASYSRDHD HGDVSSIQDQ QSRTAENNGD VTQNSNQVMN DIGEKADGGR NSTDVESDIA LQNKDKQMMV VRSNLPENNK
501: PRDSTAEKSA TSNKQMEFDP IKQHRHFCPW IWSTGRRGPG WRQTLSALQR HKGSCQTPPS SSSLFKVDDP LTSVRNLFKS PSPKKRKLNG GSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)