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AT1G48790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : associated molecule with the SH3 domain of STAM 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
associated molecule with the SH3 domain of STAM 1 (AMSH1); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 1172 Blast hits to 1019 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 476; Fungi - 293; Plants - 278; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Protein Annotations
BioGrid:26526EC:3.4.19.-eggNOG:COG1310eggNOG:KOG2880EMBL:AC073555EMBL:AY072212EMBL:AY084581
EMBL:AY096591EMBL:CP002684EnsemblPlants:AT1G48790EnsemblPlants:AT1G48790.1entrez:841301GeneID:841301Genevisible:Q8VYB5
GO:GO:0005737GO:GO:0008237GO:GO:0016020GO:GO:0046872GO:GO:0070536GO:GO:0071108Gramene:AT1G48790.1
hmmpanther:PTHR12947hmmpanther:PTHR12947:SF10HOGENOM:HOG000195792InParanoid:Q8VYB5InterPro:IPR000555InterPro:IPR015063KEGG:ath:AT1G48790
KO:K11866MEROPS:M67.A04OMA:MISFEEPPaxDb:Q8VYB5Pfam:PF01398Pfam:PF08969Pfam:Q8VYB5
PhylomeDB:Q8VYB5PRIDE:Q8VYB5PRO:PR:Q8VYB5ProteinModelPortal:Q8VYB5Proteomes:UP000006548RefSeq:NP_564533.1SMART:SM00232
SMR:Q8VYB5STRING:3702.AT1G48790.1SUPFAM:0048572SUPFAM:0051729TAIR:AT1G48790tair10-symbols:AMSH1UniGene:At.38354
UniProt:Q8VYB5
Coordinates (TAIR10) chr1:-:18043925..18047427
Molecular Weight (calculated) 57386.40 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.48
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSFETIDI ATSARRIGVD NRISLKFYFR IADNILKQAN IFRAEKNVID LYVMLLRFSS LALETIPSHR DYRTSLKSNK EYLRMRLLDV LTELEKLKPV
101: VQQRIDELYP KLKPRYNVQA HPANGSLGWS SAVKPSFNSY DHAKVRNPPG HNSGYMGSRG QQFLNAAPLE ERFRKMSVNF RPNEETLSKH SILGPGGLSA
201: QWQPPKYDTK VQYPSNIDFS PVVIPSFQQL VDSKPMITNG SNDEPEKPIV EPSVASNEKI QKNYTEELSS MISFEEPESV NENNLIRQPS PPPVLAEVQD
301: LVPALCPEVR EPECMIENSL PDESLRSESP LELHIATSMM DTFMRLAKSN TKKNLETCGI LAGSLKNRKF YITALIIPKQ ESTSDSCQAT NEEEIFEVQD
401: KQSLFPLGWI HTHPTQSCFM SSIDVHTHYS YQIMLPEAVA IVMAPQDSSR NHGIFRLTTP GGMTVIRNCD RRGFHAHSSP EDGGPIYNTC KEVYMNPNLK
501: FDVIDLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)