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AT1G48630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:15734919 (2005): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : receptor for activated C kinase 1B
Curator
Summary (TAIR10)
Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C.
Computational
Description (TAIR10)
receptor for activated C kinase 1B (RACK1B_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1C (TAIR:AT3G18130.1); Has 89864 Blast hits to 37441 proteins in 950 species: Archae - 80; Bacteria - 10219; Metazoa - 35696; Fungi - 20361; Plants - 11462; Viruses - 9; Other Eukaryotes - 12037 (source: NCBI BLink).
Protein Annotations
BioGrid:26509eggNOG:ENOG410XQGZeggNOG:KOG0279EMBL:AC073555
EMBL:AC074308EMBL:AY059723EMBL:AY087855EMBL:AY091352
EMBL:CP002684EMBL:Z26552EnsemblPlants:AT1G48630EnsemblPlants:AT1G48630.1
entrez:841284Gene3D:2.130.10.10GeneID:841284Genevisible:Q9C4Z6
GO:GO:0004871GO:GO:0005078GO:GO:0005634GO:GO:0005829
GO:GO:0006417GO:GO:0009845GO:GO:0009967GO:GO:0022626
GO:GO:0042254GO:GO:0048364GO:GO:0048367GO:GO:0071215
Gramene:AT1G48630.1hmmpanther:PTHR19868hmmpanther:PTHR19868:SF0HOGENOM:HOG000091643
InParanoid:Q9C4Z6IntAct:Q9C4Z6InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT1G48630
KO:K14753OMA:EADGHKEPaxDb:Q9C4Z6Pfam:PF00400
Pfam:Q9C4Z6Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9C4Z6
PRIDE:Q9C4Z6PRINTS:PR00320PRO:PR:Q9C4Z6PROSITE:PS00678
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q9C4Z6Proteomes:UP000006548
RefSeq:NP_175296.1scanprosite:PS00678SMART:SM00320SMR:Q9C4Z6
STRING:3702.AT1G48630.1SUPFAM:SSF50978TAIR:AT1G48630tair10-symbols:RACK1B_AT
UniGene:At.17343UniProt:Q9C4Z6
Coordinates (TAIR10) chr1:-:17981977..17983268
Molecular Weight (calculated) 35802.40 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.18
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNTLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
301: NWSADGNTLF SGYTDGVIRV WGIGRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)