AT1G48610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AT hook motif-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AT hook motif-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956); Has 1118 Blast hits to 855 proteins in 246 species: Archae - 0; Bacteria - 355; Metazoa - 300; Fungi - 142; Plants - 155; Viruses - 6; Other Eukaryotes - 160 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17971027..17972798 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 21675.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.99 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||
| Length | 212 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKTALTPPA SGSEVPRSGT PGDASGNKPQ TDATGVSATD TASQKRGRGR PPKAKSDSSQ IGAVSAKAST KPSGRPKRNV AQAVPSTSVA AAVKKRGRAK 101: RSTVTAAVVT TATGEGSRKR GRPKKDDVAA ATVPAETVVA PAKRRGRKPT VEVAAQPVRR TRKSTSVAPV AANVGDLKKR TALLQKKVKE AAAKLKQAVT 201: AIDEVQKLAD GM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)