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AT1G48580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFHDeggNOG:ENOG4111NPVEMBL:CP002684EnsemblPlants:AT1G48580EnsemblPlants:AT1G48580.1entrez:841279GeneID:841279
Gramene:AT1G48580.1hmmpanther:PTHR14523hmmpanther:PTHR14523:SF1InParanoid:F4HYI1InterPro:IPR028045KEGG:ath:AT1G48580OMA:LPQWTDE
PaxDb:F4HYI1Pfam:PF15072PRIDE:F4HYI1ProteinModelPortal:F4HYI1Proteomes:UP000006548RefSeq:NP_175291.1STRING:3702.AT1G48580.1
TAIR:AT1G48580UniGene:At.38395UniProt:F4HYI1
Coordinates (TAIR10) chr1:-:17958403..17960610
Molecular Weight (calculated) 50457.10 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.71
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSQAEVDQW EALDLGDSEL PSFLRPCKRK SPTRSLQPHA QQQNPKAGFN SNTNHRPTLR RCSSPDKFLE ESYSRSLIPG PAGVVQVAIR RKMNKDPKSF
101: NEHGEPIPTQ EFLRKAAEEP DWEDKDFSED PWVSTVDYIR SEGLLSNGGN AIGTPVSEIK RRCDSWGKVD QVVAIVKTCT PNGLGDVMVT LKDPTGTIDA
201: SVHRKVISES EFGRDIRVGA VVILKQVAVC APSRSSTYLN ITLKNISKVI TKDTPVLPNQ NDSEMSAKNH VSVNGLPKQN DSEMSGKNLV PVNENEEYLR
301: LQPNVFSVEQ STTQGIMNNL RQNAKGSSEA LHDIEMVDIN PAEGSKSSPK KGVTKNHCEV RMEQTLLGKH DSISQTEQQL YEDVATETDI ADCIRPAKQI
401: RRSSQSQIDE QESVMGNPDE VTTRTTIHKS QSMASTISLP QWTDEQLEEL FAFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)