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AT1G48550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar protein sorting-associated protein 26
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar protein sorting-associated protein 26; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); Has 299 Blast hits to 296 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 26; Plants - 78; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS9NeggNOG:KOG2717EMBL:CP002684EnsemblPlants:AT1G48550
EnsemblPlants:AT1G48550.1entrez:841276ExpressionAtlas:F4HYH6GeneID:841276
Gramene:AT1G48550.1hmmpanther:PTHR12233hmmpanther:PTHR12233:SF2InParanoid:F4HYH6
InterPro:IPR014756InterPro:IPR028934OMA:EFEVNVVPaxDb:F4HYH6
Pfam:PF03643PRIDE:F4HYH6ProteinModelPortal:F4HYH6Proteomes:UP000006548
RefSeq:NP_175288.1STRING:3702.AT1G48550.1SUPFAM:SSF81296TAIR:AT1G48550
UniGene:At.43020UniProt:F4HYH6
Coordinates (TAIR10) chr1:-:17950792..17952645
Molecular Weight (calculated) 36057.10 Da
IEP (calculated) 9.16
GRAVY (calculated) 0.03
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MATATTVNVK LSRSNRIYRS SEPVEGKIVI KSATSISHQA IRLSVNGSVN LQVRGGSAGV IESFYGVIKP IQIVKKTIEV KSSGKIPPGT TEIPFSLNLR
101: EPGEGIVEKF YETFHGTNIN IQYLLTADIP RGYLHKPLSA TMEFIIESGR VDLPERPIPP EIVIFYITQD TQRHPLLPDI KTGGFRVTGK LATQCSLQDP
201: LSGELTVEAS SVPITSIDIH LLRVESIIVG ERIVTETSLI QSTQIADGDV CRNMTLPIYV LLPRLLMCPS VFAGPFSVEF KVCITISFKS KLAKAQPKSD
301: PTAPRLWMAL ERLPLELVRT KRDQFSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)