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AT1G48520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GLU-ADT subunit B
Curator
Summary (TAIR10)
Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).
Computational
Description (TAIR10)
GLU-ADT subunit B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (InterPro:IPR003789), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal (InterPro:IPR006075); Has 9064 Blast hits to 8884 proteins in 2422 species: Archae - 562; Bacteria - 4430; Metazoa - 127; Fungi - 129; Plants - 54; Viruses - 0; Other Eukaryotes - 3762 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G48520-MONOMERBioGrid:26498EC:6.3.5.-eggNOG:COG0064eggNOG:KOG2438EMBL:AC020889EMBL:AF239836
EMBL:AK227161EMBL:AY054223EMBL:AY074557EMBL:BX815942EMBL:CP002684EnsemblPlants:AT1G48520EnsemblPlants:AT1G48520.1
entrez:841273ExpressionAtlas:Q9FV81GeneID:841273Genevisible:Q9FV81GO:GO:0005524GO:GO:0005739GO:GO:0006412
GO:GO:0009507GO:GO:0009570GO:GO:0050567GO:GO:0070681gramene_pathway:6.3.5.-gramene_pathway:PWY490-4HAMAP:MF_00121
hmmpanther:PTHR11659hmmpanther:PTHR11659:SF0HOGENOM:HOG000223742InParanoid:Q9FV81IntAct:Q9FV81InterPro:IPR003789InterPro:IPR004413
InterPro:IPR006075InterPro:IPR017958InterPro:IPR017959InterPro:IPR018027iPTMnet:Q9FV81KEGG:ath:AT1G48520KO:K02434
OMA:RAMRTKEPANTHER:PTHR11659PaxDb:Q9FV81Pfam:PF02637Pfam:PF02934Pfam:Q9FV81PhylomeDB:Q9FV81
PRIDE:Q9FV81PRO:PR:Q9FV81PROSITE:PS01234ProteinModelPortal:Q9FV81Proteomes:UP000006548RefSeq:NP_564530.1RefSeq:NP_973990.1
scanprosite:PS01234SMART:SM00845SMR:Q9FV81STRING:3702.AT1G48520.1SUPFAM:SSF55931SUPFAM:SSF89095TAIR:AT1G48520
tair10-symbols:GATBTIGRfam:TIGR00133TIGRFAMs:TIGR00133UniGene:At.22009UniProt:Q9FV81
Coordinates (TAIR10) chr1:+:17940185..17942540
Molecular Weight (calculated) 60944.50 Da
IEP (calculated) 7.72
GRAVY (calculated) -0.27
Length 550 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTTLLRTIQ LNQFSLLGTS LLRRRRSNNF SVRSCGSQTT TTHEAKQSSP TRVAPKNHKS NQLDEILRDY EAVIGIETHV QLSTLTKAFC SCSNNYGSYP
101: NTSICPVCMG LPGALPVLNS KVVEFGVRLG LALNCDLSLK SKFDRKQYFY PDLPKGYQIS QFDIPIASGG YVDVDIPLEF GGGHRRFGIT RVHMEEDAGK
201: LLHSDTGDYS QVDLNRAGVP LLEIVSEPDM RSGIEAAEYA CEMQRIARYL GVSNGNMQEG SLRCDVNISI RPIGQAEFGT KVEIKNLNAF SAISRAIDFE
301: ISRQALLYNQ GKADQIVTET RLWEEGAQKT VTMRKKEGLA DYRYFPEPDL PEVILTQEYV DSIRASLPEL PEAKRRRYEA MGLGMQDVLF LANDVSVAEY
401: FDAVIGKGAE VKLAANWIMS DIAAYLKNEK LSINDIKLTP QELAELIAAI KDGTISGKIG KEILFELLAK GGTVKGMIKA KDLVQITDPA EIEKMVIQVV
501: SENPKQLEQY RSGKTKLQGY FAGQVMKMSK GKANPGLLNK ILLEKLNAKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)