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AT1G48460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVJ9eggNOG:ENOG410YFY8EMBL:BT020308EMBL:BT020516EMBL:CP002684EnsemblPlants:AT1G48460EnsemblPlants:AT1G48460.1
entrez:841267GeneID:841267GO:GO:0009536GO:GO:0009941GO:GO:0016021Gramene:AT1G48460.1KEGG:ath:AT1G48460
OMA:SAPFQEEPhylomeDB:Q5PNY9Proteomes:UP000006548RefSeq:NP_175279.1STRING:3702.AT1G48460.1TAIR:AT1G48460TMHMM:TMhelix
UniGene:At.38414UniProt:Q5PNY9
Coordinates (TAIR10) chr1:+:17911469..17913149
Molecular Weight (calculated) 38072.80 Da
IEP (calculated) 10.09
GRAVY (calculated) 0.31
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MESKAICLGF LPPRLRFSSP RLLSLPPSPP ASSTFATRHK LDSRQTLLWN KPQLSRVRVA CSSSQSDSRP EKKQSDKSNY ARAELFRGKS GSVSFNGLTH
101: QLVEESKLVS APFQEEKGSF LWVLAPVVLI SSLILPQFFL SGIIEATFKN DTVAEIVTSF CFETVFYAGL AIFLSVTDRV QRPYLDFSSK RWGLITGLRG
201: YLTSAFLTMG LKVVVPVFAV YMTWPALGID ALIAVLPFLV GCAVQRVFEA RLERRGSSCW PIVPIVFEVY RLYQVTRAAT FVQRLMFMMK DAATTAEITE
301: RGVALVGLVV TLQFLAVMCL WSFITFLMRL FPSRPVGENY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)