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AT1G48390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G48400.1); Has 494 Blast hits to 486 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 494; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G48390EnsemblPlants:AT1G48390.1entrez:841259
Gene3D:3.80.10.10GeneID:841259Gramene:AT1G48390.1hmmpanther:PTHR31293
hmmpanther:PTHR31293:SF11InParanoid:F4HYE7InterPro:IPR006566InterPro:IPR032675
KEGG:ath:AT1G48390OMA:LITETHRPaxDb:F4HYE7PRIDE:F4HYE7
ProteinModelPortal:F4HYE7Proteomes:UP000006548RefSeq:NP_175272.1SMART:SM00579
SMR:F4HYE7TAIR:AT1G48390UniGene:At.52074UniProt:F4HYE7
Coordinates (TAIR10) chr1:-:17879448..17880903
Molecular Weight (calculated) 47295.60 Da
IEP (calculated) 5.67
GRAVY (calculated) -0.16
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVYPNEEAE NGSLRFVDFV NKTFALLGNS PIKKFSLRHE PRLYCVDAYL RWIFTAMEQE RGLLELHLYA DRYYYPVGIE RELFTSNTLV KLTLSGRYDF
101: QVETVFLPAL KSLSLSSSFE IGFDKYCNLL DGFPALEELY IREAVSELSN ALLSSGTFVK CASIKRLVVF TDCPKFKEDE DHQEPCFIAP SLVYLDYSSY
201: LSENYDLIDL NSLVEARLNL RLLESFNNYG SSDNDGDVYG WDFNVPFDYY GDVTNLVAGI TNITTLHLSP DSLEVFHFRC KSIPVFNNLL LNLSIESNKR
301: NGWQVMPLLI RSCPNLHTLV IKGFVHRVTS KCGDACACIP KKQRKIGKKE EISEYGGSFQ ELEQMRHFLG KLERLETVKV GVHAENNNNN EFLRANLLTL
401: PRLSSKCNNI QFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)