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AT1G48350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L18p/L5e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L18p/L5e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18/L5 (InterPro:IPR005484), Ribosomal protein L18, bacterial (InterPro:IPR004389); BEST Arabidopsis thaliana protein match is: Ribosomal L18p/L5e family protein (TAIR:AT1G14205.1); Has 7344 Blast hits to 7344 proteins in 2490 species: Archae - 0; Bacteria - 5225; Metazoa - 1; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 2003 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0256eggNOG:ENOG410IN4UEMBL:AK226429EnsemblPlants:AT1G48350EnsemblPlants:AT1G48350.1entrez:841255ExpressionAtlas:Q0WWC5
GeneID:841255GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT1G48350.1HAMAP:MF_01337_Bhmmpanther:PTHR12899
InterPro:IPR004389InterPro:IPR005484KEGG:ath:AT1G48350KO:K02881OMA:MPKKEQAPaxDb:Q0WWC5Pfam:PF00861
Pfam:Q9SX68PhylomeDB:Q0WWC5PRIDE:Q0WWC5ProteinModelPortal:Q0WWC5RefSeq:NP_175268.1SMR:Q0WWC5STRING:3702.AT1G48350.1
SUPFAM:SSF53137TAIR:AT1G48350TIGRfam:TIGR00060TIGRFAMs:TIGR00060UniGene:At.15427UniGene:At.67857UniProt:Q0WWC5
UniProt:Q9SX68
Coordinates (TAIR10) chr1:+:17867269..17868215
Molecular Weight (calculated) 18727.50 Da
IEP (calculated) 10.54
GRAVY (calculated) -0.40
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSVSGCGSV SLITNRSAFL GNGLQHRAVF LKPWSSSSLQ SRSMVVEAKT KTSSEDRIAR HSRIRKKVNG TTERPRLCVF RSNKHLYVQV IDDTKMHTLA
101: SASTKQKPIS EEFDYTSGPT IEVAKKVGEV IAKSCLEKGI TKVAFDRGGY PYHGRIEALA AAAREHGLQF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)