AT1G48310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chromatin remodeling factor18 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17848620..17853731 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75077.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.07 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 673 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDFWDLTVE EMDAIENEAL QRINQQRNSS SSSSLPIPNE VHTSSQGARI LPSTLAPKPN TDAGSKPQEQ KVSVKILLHS SGVLAAKFPY NQVVVDAVRK 101: IPKAIWNAKE RLWTFPHSSL SSAENILREI SSVKVEIENL DPLVQRAIAS ASRVPDLRHL YEKIPSHIEP KLLPFQREGI EFILQHGGRV LLADEMGLGK 201: TLQAIAVTTC VQESWPVLII APSSLRLHWA TMIHQWLHVP PSDIVVVLPQ PGGSNKCGFT IVSSNTKGTI HLDGVFNIVS YDVVTKLDKL LMALDFKVVI 301: ADESHFLKNG QAKRTSACLP VIKKAQYAIL LSGTPALSRP IELFKQLEAL YPDVYRNIHE YGGRYCKGGF FGTYQGASNH DELHNLMKAT VMIRRLKKDV 401: LTELPSKRRQ QVFLDLAAKD MKQINALFHE LKVVKSKIKD CISEDDIKSL KFIEKNLINK IYTDSAVAKI PAVLDYLENV IEAGCKFLVF AHHQSMLEEL 501: HQFLKKKKVG CIRIDGSTPA SSRQALVSDF QDKDEIKAAV LSIRAAGVGI TLTAASTVIF AELSWTPGDL IQAEDRAHRI GQVSSVNIHY LLANDTVDDI 601: IWDVVQSKLD NLGQMLDGQE NALDVASSHM MSSPTKPRNS PTKQQTLEPF LKRCKRLDDD TEEHQPMPKV PRF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)