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AT1G48310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chromatin remodeling factor18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0553eggNOG:KOG1000EMBL:CP002684EnsemblPlants:AT1G48310EnsemblPlants:AT1G48310.1entrez:841251Gene3D:3.40.50.300
GeneID:841251GO:GO:0005524Gramene:AT1G48310.1hmmpanther:PTHR10799InParanoid:F4HWU9InterPro:IPR000330InterPro:IPR001650
InterPro:IPR010003InterPro:IPR014001InterPro:IPR027417KEGG:ath:AT1G48310KO:K14440OMA:RDSWPVLPaxDb:F4HWU9
Pfam:PF00176Pfam:PF00271Pfscan:PS51192Pfscan:PS51194Pfscan:PS51467PRIDE:F4HWU9PRO:PR:F4HWU9
PROSITE:PS51192PROSITE:PS51194PROSITE:PS51467ProteinModelPortal:F4HWU9Proteomes:UP000006548RefSeq:NP_175265.3SMART:SM00487
SMART:SM00490SMR:F4HWU9STRING:3702.AT1G48310.1SUPFAM:SSF52540TAIR:AT1G48310tair10-symbols:CHA18tair10-symbols:CHR18
UniGene:At.38447UniGene:At.71075UniProt:F4HWU9
Coordinates (TAIR10) chr1:-:17848620..17853731
Molecular Weight (calculated) 75077.70 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.19
Length 673 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDFWDLTVE EMDAIENEAL QRINQQRNSS SSSSLPIPNE VHTSSQGARI LPSTLAPKPN TDAGSKPQEQ KVSVKILLHS SGVLAAKFPY NQVVVDAVRK
101: IPKAIWNAKE RLWTFPHSSL SSAENILREI SSVKVEIENL DPLVQRAIAS ASRVPDLRHL YEKIPSHIEP KLLPFQREGI EFILQHGGRV LLADEMGLGK
201: TLQAIAVTTC VQESWPVLII APSSLRLHWA TMIHQWLHVP PSDIVVVLPQ PGGSNKCGFT IVSSNTKGTI HLDGVFNIVS YDVVTKLDKL LMALDFKVVI
301: ADESHFLKNG QAKRTSACLP VIKKAQYAIL LSGTPALSRP IELFKQLEAL YPDVYRNIHE YGGRYCKGGF FGTYQGASNH DELHNLMKAT VMIRRLKKDV
401: LTELPSKRRQ QVFLDLAAKD MKQINALFHE LKVVKSKIKD CISEDDIKSL KFIEKNLINK IYTDSAVAKI PAVLDYLENV IEAGCKFLVF AHHQSMLEEL
501: HQFLKKKKVG CIRIDGSTPA SSRQALVSDF QDKDEIKAAV LSIRAAGVGI TLTAASTVIF AELSWTPGDL IQAEDRAHRI GQVSSVNIHY LLANDTVDDI
601: IWDVVQSKLD NLGQMLDGQE NALDVASSHM MSSPTKPRNS PTKQQTLEPF LKRCKRLDDD TEEHQPMPKV PRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)