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AT1G48160.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.979
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : signal recognition particle 19 kDa protein, putative / SRP19, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
signal recognition particle 19 kDa protein, putative / SRP19, putative; FUNCTIONS IN: 7S RNA binding; INVOLVED IN: protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP19 subunit (InterPro:IPR002778); Has 500 Blast hits to 499 proteins in 236 species: Archae - 81; Bacteria - 0; Metazoa - 158; Fungi - 144; Plants - 60; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1400eggNOG:KOG3198EMBL:AC023673EMBL:AF439847EMBL:AY088346EMBL:AY125568EMBL:CP002684
EnsemblPlants:AT1G48160EnsemblPlants:AT1G48160.1entrez:841235Gene3D:3.30.56.30GeneID:841235Genevisible:Q943Z6GO:GO:0005786
GO:GO:0006614GO:GO:0008312Gramene:AT1G48160.1hmmpanther:PTHR17453hmmpanther:PTHR17453:SF0HOGENOM:HOG000237221InParanoid:Q943Z6
InterPro:IPR002778KEGG:ath:AT1G48160KO:K03105OMA:PAYINARPANTHER:PTHR17453PaxDb:Q943Z6Pfam:PF01922
Pfam:Q943Z6PhylomeDB:Q943Z6PRIDE:Q943Z6PRO:PR:Q943Z6ProteinModelPortal:Q943Z6Proteomes:UP000006548Reactome:R-ATH-1799339
RefSeq:NP_175250.1SMR:Q943Z6STRING:3702.AT1G48160.1SUPFAM:SSF69695TAIR:AT1G48160UniGene:At.15219UniGene:At.48287
UniProt:Q943Z6
Coordinates (TAIR10) chr1:-:17786779..17788286
Molecular Weight (calculated) 16274.90 Da
IEP (calculated) 10.71
GRAVY (calculated) -0.78
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSGTINIKK WVVIYPVYIN SKKTVAEGRR ISVSKSCENP NCIEISDCCK HLKLPSAVEI DKAYPRDFMQ VGRVRVQLKR EDGTLLNPAI TSRKHLMQKI
101: AELVPRHPER VKKQEAQKAK KQEPQATTST SGTSSKSGKG GKKKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)