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AT1G48150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MADS-box transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT1G50780.1); Has 448 Blast hits to 448 proteins in 59 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 30; Plants - 389; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AC023673EMBL:CP002684EnsemblPlants:AT1G48150EnsemblPlants:AT1G48150.1entrez:841234
GeneID:841234GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT1G48150.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF204HOGENOM:HOG000152178IntAct:Q9LNG8InterPro:IPR002100KEGG:ath:AT1G48150OMA:RSVACSKPfam:PF00319
Pfscan:PS50066PhylomeDB:Q9LNG8PIR:F96521PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_175249.1SMART:SM00432
SMR:Q9LNG8STRING:3702.AT1G48150.1SUPFAM:SSF55455TAIR:AT1G48150UniGene:At.52071UniProt:Q9LNG8
Coordinates (TAIR10) chr1:+:17785397..17786368
Molecular Weight (calculated) 36478.80 Da
IEP (calculated) 4.19
GRAVY (calculated) -0.77
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSSNVTDCT MRKRGTKRKI EIEKRMTKQQ RSVACSKRRP TLFSKAADLC LLSGANIAVF VTSPDENSDV VYSFSGYSHA SEIVDCYLNN KSPPKTTINP
101: ESAKFWWEEP DLYRDCDDLS ELRIIEDRLM RTKKHLMDYL EKKEKSHSVS KSDQNPNNDS GSSSSSSQIA SDFGQNPSTL SPSSLKIVSF DQNSYSSLEP
201: SSQVTTCFDQ NPVFSVGSES SSDQSRYLVN EDSGFVDGLL CETEEENNGM RLPQETQTQP MFTEEDQSFW ENLDVDDVFG LFKDDNNLEV PLQDHSSTNE
301: DDELLIDISE YLSEEAMECP CFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)