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AT1G48100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G02460.1); Has 4526 Blast hits to 4502 proteins in 576 species: Archae - 8; Bacteria - 1381; Metazoa - 30; Fungi - 1439; Plants - 1518; Viruses - 5; Other Eukaryotes - 145 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G48100-MONOMERCAZy:GH28EC:3.2.1.15eggNOG:COG5434eggNOG:ENOG410IH0QEMBL:AC023673EMBL:AF410319
EMBL:AY050798EMBL:AY096360EMBL:CP002684EnsemblPlants:AT1G48100EnsemblPlants:AT1G48100.1entrez:841228Gene3D:2.160.20.10
GeneID:841228Genevisible:Q949Z1GO:GO:0004650GO:GO:0005576GO:GO:0005618GO:GO:0005975GO:GO:0071555
Gramene:AT1G48100.1hmmpanther:PTHR31375hmmpanther:PTHR31375:SF26HOGENOM:HOG000237792InParanoid:Q949Z1InterPro:IPR000743InterPro:IPR006626
InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT1G48100OMA:NCIIVDQPaxDb:Q949Z1Pfam:PF00295Pfam:Q949Z1
PhylomeDB:Q949Z1PIR:C96521PRIDE:Q949Z1PRO:PR:Q949Z1PROSITE:PS00502ProteinModelPortal:Q949Z1Proteomes:UP000006548
RefSeq:NP_175244.1scanprosite:PS00502SMART:SM00710SMR:Q949Z1STRING:3702.AT1G48100.1SUPFAM:SSF51126TAIR:AT1G48100
TMHMM:TMhelixUniGene:At.48286UniGene:At.70184UniProt:Q949Z1
Coordinates (TAIR10) chr1:+:17766921..17769625
Molecular Weight (calculated) 51355.30 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.25
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)