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AT1G48040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein phosphatase 2C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G17250.1); Has 6585 Blast hits to 6541 proteins in 378 species: Archae - 8; Bacteria - 146; Metazoa - 1665; Fungi - 743; Plants - 2687; Viruses - 9; Other Eukaryotes - 1327 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G48040-MONOMERBioGrid:26447EC:3.1.3.16eggNOG:COG0631
eggNOG:KOG0698EMBL:AC023673EMBL:AC051631EMBL:AK176010
EMBL:AK176676EMBL:BT015400EMBL:CP002684EnsemblPlants:AT1G48040
EnsemblPlants:AT1G48040.1entrez:841222Gene3D:3.60.40.10GeneID:841222
Genevisible:Q9LNF4GO:GO:0004722GO:GO:0046872Gramene:AT1G48040.1
hmmpanther:PTHR13832hmmpanther:PTHR13832:SF165HOGENOM:HOG000233896InParanoid:Q9LNF4
InterPro:IPR000222InterPro:IPR001932InterPro:IPR015655KEGG:ath:AT1G48040
KO:K14803OMA:DDEHIRIPANTHER:PTHR13832PaxDb:Q9LNF4
Pfam:PF00481Pfam:Q9LNF4Pfscan:PS51746PhylomeDB:Q9LNF4
PRIDE:Q9LNF4PRO:PR:Q9LNF4PROSITE:PS01032PROSITE:PS51746
ProteinModelPortal:Q9LNF4Proteomes:UP000006548Reactome:R-ATH-70895RefSeq:NP_175238.2
scanprosite:PS01032SMART:SM00331SMART:SM00332SMR:Q9LNF4
STRING:3702.AT1G48040.1SUPFAM:SSF81606TAIR:AT1G48040UniGene:At.38490
UniProt:Q9LNF4
Coordinates (TAIR10) chr1:-:17720064..17721698
Molecular Weight (calculated) 42107.90 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.12
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MILSQTMVAE AEIRVLDVKC HISAPKDQKN FQIDEVRVSE SVRAEISGSA ETPRFGSGMS CVTTTIGESA SDFIPTIRSG SFADIRSRET MEDEHICIDD
101: LSAHLGSYNF SVPSAFYGVF DGHGGPEAAI FMKENLTRLF FQDAVFPEMP SIVDAFFLEE LENSHRKAFA LADLAMADET IVSGSCGTTA LTALIIGRHL
201: LVANAGDCRA VLCRRGVAVD MSFDHRSTYE PERRRIEDLG GYFEDGYLNG VLAVTRAIGD WELKNPFTDS SSPLISDPEI GQIILTEDDE FLILACDGIW
301: DVLSSQNAVS NVRQGLRRHG DPRQCAMELG KEAARLQSSD NMTVIVICFS SVPSSPKQPQ RRRLRFCVSD EARARLQAML AGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)