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AT1G48030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : mitochondrial lipoamide dehydrogenase 1
Curator
Summary (TAIR10)
Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light.
Computational
Description (TAIR10)
mitochondrial lipoamide dehydrogenase 1 (mtLPD1); FUNCTIONS IN: dihydrolipoyl dehydrogenase activity, copper ion binding, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to light stimulus; LOCATED IN: mitochondrion, apoplast, mitochondrial respiratory chain complex I, mitochondrial matrix; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), Dihydrolipoamide dehydrogenase (InterPro:IPR006258), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: lipoamide dehydrogenase 2 (TAIR:AT3G17240.3); Has 41363 Blast hits to 41324 proteins in 3251 species: Archae - 1062; Bacteria - 30027; Metazoa - 916; Fungi - 551; Plants - 652; Viruses - 0; Other Eukaryotes - 8155 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G48030-MONOMERBioCyc:ARA:GQT-2043-MONOMERBioGrid:26446EC:1.8.1.4eggNOG:COG1249eggNOG:KOG1335EMBL:AC023673
EMBL:AC051631EMBL:AF228639EMBL:CP002684EnsemblPlants:AT1G48030EnsemblPlants:AT1G48030.1EnsemblPlants:AT1G48030.2entrez:841221
Gene3D:3.30.390.30Gene3D:3.50.50.60GeneID:841221Genevisible:Q9M5K3GO:GO:0004148GO:GO:0005507GO:GO:0005524
GO:GO:0005739GO:GO:0005747GO:GO:0005759GO:GO:0008270GO:GO:0045454GO:GO:0046686GO:GO:0048046
GO:GO:0050660GO:GO:0050897Gramene:AT1G48030.1Gramene:AT1G48030.2hmmpanther:PTHR22912hmmpanther:PTHR22912:SF148HOGENOM:HOG000276708
InParanoid:Q9M5K3IntAct:Q9M5K3InterPro:IPR004099InterPro:IPR006258InterPro:IPR012999InterPro:IPR016156InterPro:IPR023753
iPTMnet:Q9M5K3KEGG:00010+1.8.1.4KEGG:00020+1.8.1.4KEGG:00260+1.8.1.4KEGG:00280+1.8.1.4KEGG:00620+1.8.1.4KEGG:00640+1.8.1.4
KEGG:ath:AT1G48030KO:K00382OMA:FLMAADDPaxDb:Q9M5K3Pfam:PF02852Pfam:PF07992Pfam:Q9M5K3
PhylomeDB:Q9M5K3PIR:F96520PRIDE:Q9M5K3PRO:PR:Q9M5K3PROSITE:PS00076ProteinModelPortal:Q9M5K3Proteomes:UP000006548
Reactome:R-ATH-6783984Reactome:R-ATH-70268Reactome:R-ATH-70895Reactome:R-ATH-71064Reactome:R-ATH-71403RefSeq:NP_175237.1RefSeq:NP_849782.1
scanprosite:PS00076SMR:Q9M5K3STRING:3702.AT1G48030.1SUPFAM:SSF51905SUPFAM:SSF55424TAIR:AT1G48030tair10-symbols:mtLPD1
TIGRfam:TIGR01350TIGRFAMs:TIGR01350UniGene:At.15211UniProt:Q9M5K3
Coordinates (TAIR10) chr1:-:17717432..17719141
Molecular Weight (calculated) 53991.20 Da
IEP (calculated) 7.45
GRAVY (calculated) -0.04
Length 507 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMASLARRK AYFLTRNLSN SPTDALRFSF SLSRGFASSG SDENDVVIIG GGPGGYVAAI KASQLGLKTT CIEKRGALGG TCLNVGCIPS KALLHSSHMY
101: HEAKHSFANH GIKVSSVEVD LPAMLAQKDN AVKNLTRGIE GLFKKNKVTY VKGYGKFISP NEVSVETIDG GNTIVKGKHI IVATGSDVKS LPGITIDEKK
201: IVSSTGALSL SEVPKKLIVI GAGYIGLEMG SVWGRLGSEV TVVEFAGDIV PSMDGEIRKQ FQRSLEKQKM KFMLKTKVVS VDSSSDGVKL TVEPAEGGEQ
301: SILEADVVLV SAGRTPFTSG LDLEKIGVET DKAGRILVND RFLSNVPGVY AIGDVIPGPM LAHKAEEDGV ACVEFIAGKH GHVDYDKVPG VVYTHPEVAS
401: VGKTEEQLKK EGVSYRVGKF PFMANSRAKA IDNAEGLVKI LADKETDKIL GVHIMAPNAG ELIHEAVLAI NYDASSEDIA RVCHAHPTMS EALKEAAMAT
501: YDKPIHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)