AT1G47920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.550 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G48400.1); Has 444 Blast hits to 433 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 444; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17661095..17662394 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43338.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||
| Length | 379 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERGLLELHL HAESFLFVER ELFTSKTLVK LTLSAGYDFE AERVFLPALK SLYLLTDSGI DYDNHCRLLD GCPALEELFI RDADHDCPPC CGSVVKSASI 101: KRLVVLVNLP NKRDSHDYAY FEAPSLVYLD YSSYVYETYQ IVGLDSLVEA RLSLKIWDYY DYNYDYEYDD ESGDYYSDDD EGRSYCYSYV DDERKEPIFG 201: DVTNLLAGVT NITTLHLSPD SLEAFYFCCK SMPVFNKLLN LFIESNKDKG WQGMPLLLKS CPILHTLVFK GLVHRVTNKC GDACACIPKK EKRENEKKNR 301: KIVEKKLSCL WTCQVKVLEI SKYDGSFQEL KQMGHLLGKL GCLESVKVGV HADNNTEFLQ ANLLALPRLS SKCNNIQFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)