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AT1G47900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.850
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:20061580 (2010): plastid
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF869)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF869); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G19835.2); Has 79140 Blast hits to 41205 proteins in 2472 species: Archae - 1127; Bacteria - 12072; Metazoa - 37984; Fungi - 6739; Plants - 4292; Viruses - 211; Other Eukaryotes - 16715 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW02eggNOG:ENOG41105E6EMBL:AC079679EMBL:CP002684EnsemblPlants:AT1G47900EnsemblPlants:AT1G47900.1entrez:841207
ExpressionAtlas:Q9C698GeneID:841207Genevisible:Q9C698GO:GO:0005886hmmpanther:PTHR31580hmmpanther:PTHR31580:SF4HOGENOM:HOG000243346
InParanoid:Q9C698InterPro:IPR008587iPTMnet:Q9C698ncoils:CoilOMA:MCEREIKPaxDb:Q9C698Pfam:PF05911
Pfam:Q9C698PhylomeDB:Q9C698PIR:D96519PRIDE:Q9C698PRO:PR:Q9C698ProteinModelPortal:Q9C698Proteomes:UP000006548
RefSeq:NP_175226.1STRING:3702.AT1G47900.1SUPFAM:SSF57997TAIR:AT1G47900UniGene:At.43430UniProt:Q9C698
Coordinates (TAIR10) chr1:-:17647340..17651035
Molecular Weight (calculated) 118546.00 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.78
Length 1054 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDRRSWPWKK KASDKSILVI DSAADASHSQ IDKEAIKKPK YVQISVEQYT HFTGLEEQIK SYDVQIKGYD VQVKTYENQV ESYEEQVKDF EEQIDAYDEK
0101: VHEYEEQVQK LNEDVEDLNE KLSVANEEIV TKEALVKQHS KVAEDAVSGW EKADAEALAL KNTLESVTLS KLTAEDRAAH LDGALKECMR QIRNLKKDHE
0201: VKLHDVALSK TKQIEKMTME FEKRMCDYEQ ELLRSAADSD ALSRTLQERS NMLVKVSEEK SRADAEIETL KSNLEMCERE IKSLKYEVHV VSKELEIRNE
0301: EKNMCIRSAE SANKQHLEGV KKIAKLEAEC QRLRSLVRKK LPGPAALAQM KLEVENLGRD SGDARQKRSP VKVSSPCKSP GGYSSTGSEF SLDNAQKFQK
0401: ENEFLTERLL AMEEETKMLK EALAKRNSEL LESRNLCAQS TSKLQSLEAQ LQQNNSQKSS LEVCPNLNTS NPSSSISVSE DGNDDSGSCS GSLSTNPSQQ
0501: IKKEKDMAAL ERVESVNSHV ELMDDFLEME KLACLPNLSS SNGSIDSKDG SGDQKSEMVI LDAHTDLEDS DRGSPAVMKF RSRLSKVLES VSPDADIQKI
0601: VGDIKCILQD VNACMDQEKP SEVHVHPEEV SDLCPEQNLV EDCHLAEQKL QSIHQDLKNA VSRIHDFVLL LRNEVKAGQD TSIEGNDFVE LIEGFSVTFN
0701: HVLSGDKSLD DFVSNLANVF NEAMERKVSF RGLASSEVET LSPDCIDKVA LPESKVVDKD SSQEIYQNGC VHNEPGVPCD ENRVSGYESD SKLQEIEELR
0801: SEKEKMAVDI EGLKCQLQES EQLLADIRSQ FDSAQRSNRL ADTQLRCMTE SYRSLESRAA DLEIDVNQLK EKIQKLENEL EDEKCNHQEA ILRCHELEEH
0901: IQRHRNTSLV AEDDEEADIK SKQERELSAA AEKLAECQET IFVLGKQLKS FRPQPEQMRS PQTRNESYSE EEELGTTTTS VPKNYAVVDE GDSVNEVPRF
1001: MESPKCPSDS ETSDTTTSPS RVGSRLSRSG SSTNATPEKA SRGISRFFSS KSGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)