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AT1G47730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.498
cytosol 0.487
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G48060.1); Has 1939 Blast hits to 1873 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1937; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:26409EMBL:AC007519EMBL:AC012463EMBL:CP002684
EnsemblPlants:AT1G47730EnsemblPlants:AT1G47730.1entrez:841184GeneID:841184
Genevisible:Q9SXA0Gramene:AT1G47730.1hmmpanther:PTHR31790hmmpanther:PTHR31790:SF10
HOGENOM:HOG000064703InParanoid:Q9SXA0InterPro:IPR001810InterPro:IPR013187
InterPro:IPR017451KEGG:ath:AT1G47730OMA:HIETLMSPaxDb:Q9SXA0
Pfam:PF00646Pfam:PF08268Pfam:Q9SXA0Pfscan:PS50181
PhylomeDB:Q9SXA0PIR:A96518PRIDE:Q9SXA0PRO:PR:Q9SXA0
PROSITE:PS50181ProteinModelPortal:Q9SXA0Proteomes:UP000006548RefSeq:NP_175204.1
SMART:SM00256SMR:Q9SXA0STRING:3702.AT1G47730.1SUPFAM:SSF81383
TAIR:AT1G47730TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.65988
UniProt:Q9SXA0
Coordinates (TAIR10) chr1:-:17563931..17565106
Molecular Weight (calculated) 45901.90 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.49
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQREEKTEN IQRKRSRGKS SSSSLPLDLT SEIFSRLPAK SVVRFRCVSK LWSSITTAPY FTNSFETRPN LMFFFKEGDK FFVFTIPQHN QNPNESYSYS
101: SSEIIDSYHT TYPKRCCVTT LTESVHGLIC FRKAATPIIW NPTMRKFKPL RKLDERWKNI KVSLGYDPVD GKHKVVCMPY GNAFYECRVL TLGSDQEWRT
201: VKTNHKNSPF TFHGGVCYRQ SRCINGVIYY RADTNSGRVI LSFDVRSERF DVIELPWDEN FGLVMMMSYK GRLACLGFNH EKNSRSMWVL ENVEQREWSC
301: HTYLPISHYE PGLENYFNLT GITNDGELIY VPNTVLERFH VIYFDAIRET FRRVIYKGVA DKGFRLRNGL EDKPIRRLHF FPNHIETLMS L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)