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AT1G47710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.886
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Serine protease inhibitor (SERPIN) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Serine protease inhibitor (SERPIN) family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT3G45220.1); Has 6643 Blast hits to 6565 proteins in 500 species: Archae - 66; Bacteria - 387; Metazoa - 5142; Fungi - 12; Plants - 353; Viruses - 463; Other Eukaryotes - 220 (source: NCBI BLink).
Protein Annotations
BioGrid:26407eggNOG:COG4826eggNOG:KOG2392EMBL:AC007519EMBL:AC012463EMBL:BT002483EMBL:BT008481
EMBL:CP002684EnsemblPlants:AT1G47710EnsemblPlants:AT1G47710.1entrez:841182EvolutionaryTrace:Q9S7T8GeneID:841182Genevisible:Q9S7T8
GO:GO:0004867GO:GO:0004869GO:GO:0005615GO:GO:0010951GO:GO:0048046Gramene:AT1G47710.1hmmpanther:PTHR11461
hmmpanther:PTHR11461:SF171HOGENOM:HOG000238520InParanoid:Q9S7T8InterPro:IPR000215InterPro:IPR023795InterPro:IPR023796KEGG:ath:AT1G47710
KO:K13963MEROPS:I04.087OMA:ACIEVNEPANTHER:PTHR11461PaxDb:Q9S7T8PDB:3LE2PDBsum:3LE2
Pfam:PF00079Pfam:Q9S7T8PhylomeDB:Q9S7T8PIR:H96517PRIDE:Q9S7T8PRO:PR:Q9S7T8PROSITE:PS00284
ProteinModelPortal:Q9S7T8Proteomes:UP000006548Reactome:R-ATH-114608RefSeq:NP_175202.1scanprosite:PS00284SMART:SM00093SMR:Q9S7T8
STRING:3702.AT1G47710.1SUPFAM:SSF56574TAIR:AT1G47710UniGene:At.24855UniProt:Q9S7T8
Coordinates (TAIR10) chr1:+:17558271..17560061
Molecular Weight (calculated) 42641.70 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.05
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVRESISLQ NQVSMNLAKH VITTVSQNSN VIFSPASINV VLSIIAAGSA GATKDQILSF LKFSSTDQLN SFSSEIVSAV LADGSANGGP KLSVANGAWI
101: DKSLSFKPSF KQLLEDSYKA ASNQADFQSK AVEVIAEVNS WAEKETNGLI TEVLPEGSAD SMTKLIFANA LYFKGTWNEK FDESLTQEGE FHLLDGNKVT
201: APFMTSKKKQ YVSAYDGFKV LGLPYLQGQD KRQFSMYFYL PDANNGLSDL LDKIVSTPGF LDNHIPRRQV KVREFKIPKF KFSFGFDASN VLKGLGLTSP
301: FSGEEGLTEM VESPEMGKNL CVSNIFHKAC IEVNEEGTEA AAASAGVIKL RGLLMEEDEI DFVADHPFLL VVTENITGVV LFIGQVVDPL H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)