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AT1G47670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: LYS/HIS transporter 7 (TAIR:AT4G35180.1); Has 1570 Blast hits to 1567 proteins in 175 species: Archae - 0; Bacteria - 20; Metazoa - 174; Fungi - 154; Plants - 1118; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Protein Annotations
BioGrid:26402eggNOG:COG0814eggNOG:KOG1303EMBL:AB030586EMBL:AC007519EMBL:AY065445EMBL:AY117276
EMBL:CP002684EnsemblPlants:AT1G47670EnsemblPlants:AT1G47670.1entrez:841177GeneID:841177Genevisible:Q9SX98GO:GO:0005886
GO:GO:0006865GO:GO:0016021Gramene:AT1G47670.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF281HOGENOM:HOG000241295InParanoid:Q9SX98
InterPro:IPR013057iPTMnet:Q9SX98KEGG:ath:AT1G47670OMA:IGGIWSMPaxDb:Q9SX98Pfam:PF01490Pfam:Q9SX98
PhylomeDB:Q9SX98PIR:F96517PRIDE:Q9SX98PRO:PR:Q9SX98ProteinModelPortal:Q9SX98Proteomes:UP000006548RefSeq:NP_175198.1
STRING:3702.AT1G47670.1TAIR:AT1G47670TCDB:2.A.18.2.8TMHMM:TMhelixUniGene:At.28480UniProt:Q9SX98
Coordinates (TAIR10) chr1:-:17536834..17539486
Molecular Weight (calculated) 57122.20 Da
IEP (calculated) 9.55
GRAVY (calculated) 0.50
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MDERPETELI SIPATPRVST PEILTPSGQR SPRPATKPSS ATWTPTSFIS PRFLSPIGTP MKRVLVNMKG YLEEVGHLTK LNPQDAWLPI TESRNGNAHY
101: AAFHNLNAGV GFQALVLPVA FAFLGWSWGI LSLTIAYCWQ LYTLWILVQL HEAVPGKRYN RYVELAQAAF GERLGVWLAL FPTVYLSAGT ATALILIGGE
201: TMKLFFQIVC GPLCTSNPLT TVEWYLVFTS LCIVLSQLPN LNSIAGLSLI GAVTAITYST MVWVLSVSQP RPATISYEPL SMPSTSGSLF AVLNALGIIA
301: FAFRGHNLVL EIQSTMPSTF KHPAHVPMWR GAKISYFLIA LCIFPISIGG FWAYGNLMPS GGMLAALYAF HIHDIPRGLL ATAFLLVVFS CLSSFQIYSM
401: PAFDSFEAGY TSRTNKPCSI WVRSGFRVFF GFVSFFIGVA LPFLSSLAGL LGGLTLPVTF AYPCFMWVLI KKPAKYSFNW YFHWGLGWLG VAFSLAFSIG
501: GIWSMVTNGL KLKFFKPPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)