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AT1G47655.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT5G66940.1); Has 1094 Blast hits to 1089 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1089; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JDV9eggNOG:ENOG411136QEMBL:AB493502EMBL:AC007519EMBL:CP002684EnsemblPlants:AT1G47655EnsemblPlants:AT1G47655.1
entrez:841175GeneID:841175Genevisible:Q9SX97GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0046872Gramene:AT1G47655.1hmmpanther:PTHR31992HOGENOM:HOG000005865InParanoid:Q9SX97InterPro:IPR003851
KEGG:ath:AT1G47655OMA:GLEISMQPaxDb:Q9SX97Pfam:PF02701Pfam:Q9SX97Pfscan:PS50884PIR:E96517
PRIDE:Q9SX97PRO:PR:Q9SX97ProDom:PD007478PROSITE:PS01361PROSITE:PS50884Proteomes:UP000006548RefSeq:NP_564510.1
scanprosite:PS01361TAIR:AT1G47655UniGene:At.38579UniProt:Q9SX97
Coordinates (TAIR10) chr1:+:17525437..17526066
Molecular Weight (calculated) 22293.80 Da
IEP (calculated) 7.20
GRAVY (calculated) -0.56
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSEPNQTRP TRVQPSTAAY PPPNLAEPLP CPRCNSTTTK FCYYNNYNLA QPRYYCKSCR RYWTQGGTLR DVPVGGGTRR SSSKRHRSFS TTATSSSSSS
101: SVITTTTQEP ATTEASQTKV TNLISGHGSF ASLLGLGSGN GGLDYGFGYG YGLEEMSIGY LGDSSVGEIP VVDGCGGDTW QIGEIEGKSG GDSLIWPGLE
201: ISMQTNDVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)