AT1G47550.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : exocyst complex component sec3A | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst complex component sec3A (SEC3A); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, exocyst; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Exocyst complex, component Exoc1 (InterPro:IPR019160); BEST Arabidopsis thaliana protein match is: exocyst complex component sec3B (TAIR:AT1G47560.1); Has 427 Blast hits to 415 proteins in 159 species: Archae - 5; Bacteria - 8; Metazoa - 155; Fungi - 110; Plants - 105; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:17457171..17463896 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100070.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.44 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 887 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKSSADDEE LRRACEAAIE GTKQSIVMSI RVAKSRGVWG KSGKLGRQMA KPRVLALSVK SKGPRKKAFL RVMKYSSGGV LEPAKMYKLK HLSKVEVITN 101: DPSGCTFTLG FDNLRSQSVA PPQWTMRNTD DRNRLLVCIL NICKDVLGRL PKVVGIDIVE MALWAKDNTP VVTTQRSTED GEPVAESVTE SDLKVTVEKE 201: LVSQAEEEDM EALLGTYVMG IGEAEAFSER LKRELQALEA ANVHAILESE PLVDEVLNGL EAATNIVDDM DEWLGIFNIK LRHMREDIES IETRNNKLEM 301: QSVNNKALIE ELDKVIERLR VPSEYAASLT GGSFDEADML QNIEACEWLA KALRGLEVPN LDPIYANMRA VKEKRAELEK LKATFVRRAS EFLRNYFASL 401: VDFMVSDKSY FSQRGQLKRP DHADLRYKCR TYARLLQHLK GLDKNCLGPL RKAYCSSLNL LLRREAREFA NELRASTKVS RNPTVWLEGS TGSSQNANTD 501: TSAVSDAYAK MLTIFIPLLV DESSFFAHFM CFEVPALAPP GGAGNDKKSQ SNNDDGNDDD DLGIMDIDET DKKPGKNSPD LTALNESLQD LLDGIQEDFY 601: AVVDWAYKID PLRCISMHGI TERYLSGQKA DAAGFVRLLL GDLESRVSMQ FSRFVDEACH QIERNERNVR QMGVLPYIPR FAALATRMEQ YIQGQSRDLV 701: DQAYTKFVSI MFVTLEKIAQ QDPKYADILL LENYAAFQNS LYDLANVVPT LAKFYHQASE AYEQACTRHI SMIIYYQFER LFQFAKKIED FMYTITPEEI 801: PFQLGLSKVE LRKMLKSSLS GVDKSIAAMY KKLQKNLASE ELLPSLWDKC KKEFLDKYES FVQLVAKVYP SENVPGVTEM RGLLASM |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)