suba logo
AT1G47530.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 0.955
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25641898 (2015): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, ripening, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: root hair specific 2 (TAIR:AT1G12950.1); Has 9964 Blast hits to 9893 proteins in 2013 species: Archae - 182; Bacteria - 7111; Metazoa - 140; Fungi - 326; Plants - 1355; Viruses - 0; Other Eukaryotes - 850 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AC007519EMBL:AY058871EMBL:BT003024EMBL:CP002684EnsemblPlants:AT1G47530
EnsemblPlants:AT1G47530.1entrez:841162GeneID:841162Genevisible:Q9SX83GO:GO:0005774GO:GO:0015238GO:GO:0015297
GO:GO:0016021Gramene:AT1G47530.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF115HOGENOM:HOG000177025InParanoid:Q9SX83IntAct:Q9SX83
InterPro:IPR002528KEGG:ath:AT1G47530KO:K03327OMA:FHVALTWPaxDb:Q9SX83Pfam:PF01554PhylomeDB:Q9SX83
PIR:F96515PRIDE:Q9SX83ProteinModelPortal:Q9SX83Proteomes:UP000006548RefSeq:NP_175184.1STRING:3702.AT1G47530.1TAIR:AT1G47530
TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.11506UniProt:Q9SX83
Coordinates (TAIR10) chr1:+:17451724..17454110
Molecular Weight (calculated) 52426.10 Da
IEP (calculated) 7.20
GRAVY (calculated) 0.78
Length 484 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKDKTLPLL DPREPPELTG TKSASKVWAK EFGEESKRLW ELAGPAIFTA ISQYSLGALT QTFSGRLGEL ELAAVSVENS VISGLAFGVM LGMGSALETL
101: CGQAYGAGQI RMMGIYMQRS WVILFTTALF LLPVYIWAPP ILSFFGEAPH ISKAAGKFAL WMIPQLFAYA ANFPIQKFLQ SQRKVLVMAW ISGVVLVIHA
201: VFSWLFILYF KWGLVGAAIT LNTSWWLIVI GQLLYILITK SDGAWTGFSM LAFRDLYGFV KLSLASALML CLEFWYLMVL VVVTGLLPNP LIPVDAISIC
301: MNIEGWTAMI SIGFNAAISV RVSNELGAGN AALAKFSVIV VSITSTLIGI VCMIVVLATK DSFPYLFTSS EAVAAETTRI AVLLGFTVLL NSLQPVLSGV
401: AVGAGWQALV AYVNIACYYI IGLPAGLVLG FTLDLGVQGI WGGMVAGICL QTLILIGIIY FTNWNKEAEQ AESRVQRWGG TAQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)