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AT1G47340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G47350.1); Has 1903 Blast hits to 1829 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1899; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:26362eggNOG:ENOG410JTUIeggNOG:ENOG41107HYEMBL:AC015449EMBL:BT003911EMBL:BT026500EMBL:CP002684
EnsemblPlants:AT1G47340EnsemblPlants:AT1G47340.1entrez:841137GeneID:841137Genevisible:Q0V7S0Gramene:AT1G47340.1hmmpanther:PTHR31790
hmmpanther:PTHR31790:SF10HOGENOM:HOG000064703InParanoid:Q0V7S0InterPro:IPR001810InterPro:IPR013187InterPro:IPR017451KEGG:ath:AT1G47340
ncoils:CoilOMA:CEVINYKPaxDb:Q0V7S0Pfam:PF00646Pfam:PF08268Pfam:Q0V7S0Pfscan:PS50181
PhylomeDB:Q0V7S0PIR:B96514PRIDE:Q0V7S0PRO:PR:Q0V7S0PROSITE:PS50181ProteinModelPortal:Q0V7S0Proteomes:UP000006548
RefSeq:NP_175167.2SMART:SM00256STRING:3702.AT1G47340.1SUPFAM:SSF81383TAIR:AT1G47340TIGRfam:TIGR01640TIGRFAMs:TIGR01640
UniGene:At.44136UniGene:At.71099UniProt:Q0V7S0
Coordinates (TAIR10) chr1:-:17354123..17356494
Molecular Weight (calculated) 53456.40 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.37
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKKTAPNSP KRRRCSSFAA VDLVGSANRT FMVSVSLPKE LILEILKRLP AKSVKRFHCV SKQWASMLSC PHFRELFLTR SSSAQPRLLF AIEKHNQWSL
101: FSLPQRLTPY EKSSSSSVVV TPEFHMKFPP DGMLIYPRHD RRFSFGYASG LMYFYGMWIN EHDYDGVPVI CNPLTGRYAS LPFLERYRKA FSFFGFDPIE
201: KQYKVLFMAY PSGPDHHTVL TFGTGEMSWR KIECSVKHDI VSDGICINGV MYYLGDTSEF MTAFVVVCFD VRSETFSFIY PGSYCEVINY KGKLGLVFCD
301: DYTDDAIELR LWVLEDKEKI EWSKYAYKLK DEKFSAHYVS IVGVSAAGEI VLSMADFTSK QPFYVFYYNP ERNTLQCTEI QGFEEHHGTF DRRSRVRVFV
401: DDCSSFYRFA DHVEYLNVDE PKLLKSKIYD GPNAKIEWEE EEEEDEDEDQ EKEEEDQWS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)