AT1G47330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CBS domain-containing protein with a domain of unknown function (DUF21) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 11150 Blast hits to 10836 proteins in 2494 species: Archae - 102; Bacteria - 8237; Metazoa - 428; Fungi - 268; Plants - 237; Viruses - 0; Other Eukaryotes - 1878 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17351149..17353739 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57933.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSDIPCCGT TFSLYVVIII ALVAFAGLMA GLTLGLMSLG LVDLEVLIKS GRPQDRINAG KIFPVVKNQH LLLCTLLIGN SMAMEALPIF LDKIVPPWLA 101: ILLSVTLILV FGEIMPQAVC TRYGLKVGAI MAPFVRVLLV LFFPISYPIS KVLDWMLGKG HGVLLRRAEL KTFVNFHGNE AGKGGDLTTD ETSIITGALE 201: LTEKTAKDAM TPISNAFSLE LDTPLNLETL NTIMSVGHSR VPVYFRNPTH IIGLILVKNL LAVDARKEVP LRKMSMRKIP RVSETMPLYD ILNEFQKGHS 301: HIAVVYKDLD EQEQSPETSE NGIERRKNKK TKDELFKDSC RKPKAQFEVS EKEVFKIETG DAKSGKSENG EEQQGSGKTS LLAAPAKKRH RGCSFCILDI 401: ENTPIPDFPT NEEVVGVITM EDVIEELLQE EILDETDEYV NIHNRIRVNM HASPENLPSV ITSITQSSSG STSPNQTSHM ATPDSSPTTK PSNSSPTRKP 501: SVSSPTREPS DSSHSMAPKH EESTQTL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)