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AT1G47280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSVHeggNOG:ENOG41108FWEMBL:BT026402EMBL:CP002684EMBL:DQ446334EnsemblPlants:AT1G47280EnsemblPlants:AT1G47280.1
entrez:841131GeneID:841131Gramene:AT1G47280.1KEGG:ath:AT1G47280OMA:WADWATSProteomes:UP000006548RefSeq:NP_564501.1
TAIR:AT1G47280UniGene:At.38655UniProt:Q1PFM9
Coordinates (TAIR10) chr1:-:17332241..17334310
Molecular Weight (calculated) 8470.16 Da
IEP (calculated) 5.80
GRAVY (calculated) 0.07
Length 80 amino acids
Sequence (TAIR10)
(BLAST)
1: MEKVKFFAII FTVSMVMTMV SAEELPVKVT GNEMTLAAEA AASSFKSSAG EAAQGAKSWA DWATSKIRHL GSLEKTPGSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)