suba logo
AT1G47128.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Granulin repeat cysteine protease family protein
Curator
Summary (TAIR10)
cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21)
Computational
Description (TAIR10)
responsive to dehydration 21 (RD21); FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: response to water deprivation; LOCATED IN: apoplast, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 8846 Blast hits to 8044 proteins in 757 species: Archae - 51; Bacteria - 244; Metazoa - 4223; Fungi - 6; Plants - 1942; Viruses - 134; Other Eukaryotes - 2246 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G47128-MONOMERBioGrid:26347EC:3.4.22.-eggNOG:COG4870eggNOG:KOG1543eggNOG:KOG4296EMBL:AC083835
EMBL:AY072130EMBL:AY133781EMBL:CP002684EMBL:D13043EnsemblPlants:AT1G47128EnsemblPlants:AT1G47128.1entrez:841122
GeneID:841122Genevisible:P43297GO:GO:0004197GO:GO:0005615GO:GO:0005764GO:GO:0005773GO:GO:0006508
GO:GO:0008233GO:GO:0008234GO:GO:0009506GO:GO:0009507GO:GO:0048046GO:GO:0050832GO:GO:0051603
Gramene:AT1G47128.1hmmpanther:PTHR12411hmmpanther:PTHR12411:SF344HOGENOM:HOG000230773InParanoid:P43297IntAct:P43297InterPro:IPR000118
InterPro:IPR000169InterPro:IPR000668InterPro:IPR013128InterPro:IPR013201InterPro:IPR025660InterPro:IPR025661KEGG:ath:AT1G47128
MEROPS:C01.064merops:I29.003OMA:MSIVVITPANTHER:PTHR12411PaxDb:P43297Pfam:P43297Pfam:PF00112
Pfam:PF00396Pfam:PF08246PhylomeDB:P43297PIR:JN0719PRIDE:P43297PRINTS:PR00705PRO:PR:P43297
PROSITE:PS00139PROSITE:PS00639PROSITE:PS00640ProteinModelPortal:P43297Proteomes:UP000006548RefSeq:NP_564497.1scanprosite:PS00139
scanprosite:PS00639scanprosite:PS00640SMART:SM00277SMART:SM00645SMART:SM00848SMR:P43297STRING:3702.AT1G47128.1
SUPFAM:SSF54001SUPFAM:SSF57277TAIR:AT1G47128tair10-symbols:RD21tair10-symbols:RD21AUniGene:At.43549UniGene:At.47599
UniGene:At.71705UniProt:P43297
Coordinates (TAIR10) chr1:-:17283139..17285609
Molecular Weight (calculated) 50968.90 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.45
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)