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AT1G46696.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF601
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF601; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF601 (InterPro:IPR006736); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF601 (TAIR:AT2G15110.1); Has 2393 Blast hits to 1960 proteins in 383 species: Archae - 25; Bacteria - 366; Metazoa - 883; Fungi - 248; Plants - 130; Viruses - 13; Other Eukaryotes - 728 (source: NCBI BLink).
Protein Annotations
EMBL:AC083835EMBL:CP002684EnsemblPlants:AT1G46696EnsemblPlants:AT1G46696.1entrez:841116GeneID:841116Gramene:AT1G46696.1
hmmpanther:PTHR31099HOGENOM:HOG000152165InterPro:IPR006736KEGG:ath:AT1G46696ncoils:CoilPfam:PF04642PhylomeDB:Q9C631
PIR:G96511Proteomes:UP000006548RefSeq:NP_175146.1TAIR:AT1G46696UniGene:At.52043UniProt:Q9C631
Coordinates (TAIR10) chr1:-:17261860..17264183
Molecular Weight (calculated) 68588.40 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.67
Length 616 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPRKVVREV FLMDGKFGKY QTSLSTSSRL SLLRGAHQIP RQIQLISPEP TVCPENPPPG HTCAFEIFFS LCGLYFPLPD VLIDLMHEFG IALPQLCPNL
101: YAVKKGRTKG TFFLSPRKGF RVFDDFPDKD EQWRKSYFFF PVNELTYGNK TGLFVSEWAA RTVKVSTPPV SHTFAAHFSN FCRQDLAEKD KARIKSDRTV
201: MAGTLEDSKL RSLEKTKYQP SDSGSRPETP TSVSAGKKPE TPTSGSGKAL KDPAGKDPEK RAADKKRKQP EEISHSPPRS SRPRQEEKGA KLKGVVEDAP
301: QNLVVLSSRE SETRESERRN VPLPAPPMTF ADTMRTLVPP GSAIAPFDEM KEVNKDNYLR FAGKLGKVKP ELNQYPLCPS TPFSAATSFK RNEDENAKAV
401: EKANKVMNRM KAAELQVQKL EVNNIDLTAK LEAGKNAYLD AVDKETQARA DLKACEEKLK KMEEEQAALI AAARTDERRK VRAQFHDFSS KYGNFFKESE
501: EVETLKVRAA EAKANRELLE EIEKGEIPDL SKELESVRAD EEKFARQAAE PKTPHPDPTE LISLLADTPP EVVVESIPSA EVVVIDEGGS NKGSASEARI
601: AAMFPVDVEK DSGRAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)