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AT1G45688.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHCReggNOG:ENOG410YGAREMBL:AC083835EMBL:AK221686EMBL:AY088597EMBL:AY099826EMBL:BT000323
EMBL:CP002684EnsemblPlants:AT1G45688EnsemblPlants:AT1G45688.1entrez:841102ExpressionAtlas:Q9C636GeneID:841102GO:GO:0005886
GO:GO:0016021Gramene:AT1G45688.1hmmpanther:PTHR31852hmmpanther:PTHR31852:SF44HOGENOM:HOG000240810KEGG:ath:AT1G45688OMA:PPGKGWQ
PhylomeDB:Q9C636PIR:A96511Proteomes:UP000006548RefSeq:NP_564495.1STRING:3702.AT1G45688.1SwissPalm:Q9C636TAIR:AT1G45688
TMHMM:TMhelixUniGene:At.22272UniProt:Q9C636
Coordinates (TAIR10) chr1:+:17191502..17192870
Molecular Weight (calculated) 37203.00 Da
IEP (calculated) 10.52
GRAVY (calculated) -0.35
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MHAKTDSEVT SLAASSPARS PRRPVYYVQS PSRDSHDGEK TATSFHSTPV LSPMGSPPHS HSSMGRHSRE SSSSRFSGSL KPGSRKVNPN DGSKRKGHGG
101: EKQWKECAVI EEEGLLDDGD RDGGVPRRCY VLAFIVGFFI LFGFFSLILY GAAKPMKPKI TVKSITFETL KIQAGQDAGG VGTDMITMNA TLRMLYRNTG
201: TFFGVHVTST PIDLSFSQIK IGSGSVKKFY QGRKSERTVL VHVIGEKIPL YGSGSTLLPP APPAPLPKPK KKKGAPVPIP DPPAPPAPVP MTLSFVVRSR
301: AYVLGKLVQP KFYKKIECDI NFEHKNLNKH IVITKNCTVT TV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)