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AT1G45474.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem I light harvesting complex gene 5
Curator
Summary (TAIR10)
Encodes a component of the light harvesting complex of photosystem I.
Computational
Description (TAIR10)
photosystem I light harvesting complex gene 5 (LHCA5); FUNCTIONS IN: pigment binding; INVOLVED IN: photosynthesis, light harvesting in photosystem I, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, photosystem I antenna complex, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light-harvesting chlorophyll-protein complex I subunit A4 (TAIR:AT3G47470.1); Has 2339 Blast hits to 2263 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 331 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IS4MeggNOG:ENOG4110J6AEMBL:AC083835EMBL:AF134121EMBL:AK221694EMBL:AK316926EMBL:AY062097
EMBL:AY088144EMBL:AY090263EMBL:CP002684EnsemblPlants:AT1G45474EnsemblPlants:AT1G45474.1EnsemblPlants:AT1G45474.2entrez:841099
Gene3D:1.10.3460.10GeneID:841099GO:GO:0009409GO:GO:0009416GO:GO:0009507GO:GO:0009535GO:GO:0009644
GO:GO:0009645GO:GO:0009768GO:GO:0009782GO:GO:0009941GO:GO:0010287GO:GO:0016020GO:GO:0016021
GO:GO:0016168GO:GO:0018298GO:GO:0031409GO:GO:0042803GO:GO:0046872Gramene:AT1G45474.1Gramene:AT1G45474.2
hmmpanther:PTHR21649hmmpanther:PTHR21649:SF23HOGENOM:HOG000238033InterPro:IPR001344InterPro:IPR022796InterPro:IPR023329KEGG:ath:AT1G45474
KO:K08911OMA:HAGPIDNPANTHER:PTHR21649PaxDb:Q9C639Pfam:PF00504PhylomeDB:Q9C639PIR:F96510
PIR:T52328ProteinModelPortal:Q9C639Proteomes:UP000006548RefSeq:NP_175137.1RefSeq:NP_849778.1SMR:Q9C639STRING:3702.AT1G45474.1
SUPFAM:0043399SUPFAM:SSF103511TAIR:AT1G45474tair10-symbols:LHCA5UniGene:At.20798UniGene:At.52042UniProt:Q9C639
Coordinates (TAIR10) chr1:+:17179353..17180439
Molecular Weight (calculated) 27803.60 Da
IEP (calculated) 7.26
GRAVY (calculated) 0.08
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVVLRGGIT GGFLHHRRDA SSVITRRISS VKAAGGGINP TVAVERATWL PGLNPPPYLD GNLAGDYGFD PLGLGEDPES LKWYVQAELV HSRFAMLGVA
101: GILFTDLLRT TGIRNLPVWY EAGAVKFDFA STKTLIVVQF LLMGFAETKR YMDFVSPGSQ AKEGSFFFGL EAALEGLEPG YPGGPLLNPL GLAKDVQNAH
201: DWKLKEIKNG RLAMMAMLGF FVQASVTHTG PIDNLVEHLS NPWHKTIIQT LFTSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)