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AT1G45145.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22215637 (2012): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : thioredoxin H-type 5
Curator
Summary (TAIR10)
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Computational
Description (TAIR10)
thioredoxin H-type 5 (TRX5); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: response to oxidative stress, response to cadmium ion, defense response to fungus, response to microbial phytotoxin; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin 3 (TAIR:AT5G42980.1); Has 18724 Blast hits to 18448 proteins in 2947 species: Archae - 261; Bacteria - 10598; Metazoa - 1825; Fungi - 834; Plants - 1766; Viruses - 10; Other Eukaryotes - 3430 (source: NCBI BLink).
Protein Annotations
BioGrid:26307eggNOG:COG0526eggNOG:KOG0907EMBL:AC007915EMBL:AF360227EMBL:AK118035EMBL:AK221784
EMBL:AY040028EMBL:AY087159EMBL:CP002684EMBL:U35829EMBL:Z35476EnsemblPlants:AT1G45145EnsemblPlants:AT1G45145.1
entrez:841082Gene3D:3.40.30.10GeneID:841082Genevisible:Q39241GO:GO:0000103GO:GO:0005829GO:GO:0005886
GO:GO:0006457GO:GO:0006662GO:GO:0006979GO:GO:0009506GO:GO:0010188GO:GO:0015035GO:GO:0016671
GO:GO:0034599GO:GO:0045454GO:GO:0046686GO:GO:0048046GO:GO:0050832Gramene:AT1G45145.1hmmpanther:PTHR10438
hmmpanther:PTHR10438:SF274HOGENOM:HOG000292977InParanoid:Q39241IntAct:Q39241InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766
InterPro:IPR017937KEGG:ath:AT1G45145KO:K03671OMA:GREHARVPANTHER:PTHR10438PaxDb:Q39241Pfam:PF00085
Pfam:Q39241Pfscan:PS51352PhylomeDB:Q39241PIR:G96509PIR:S58120PRIDE:Q39241PRO:PR:Q39241
PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q39241Proteomes:UP000006548RefSeq:NP_175128.1scanprosite:PS00194SMR:Q39241
STRING:3702.AT1G45145.1SUPFAM:SSF52833SwissPalm:Q39241TAIR:AT1G45145tair10-symbols:ATH5tair10-symbols:ATTRX5tair10-symbols:LIV1
tair10-symbols:TRX5UniGene:At.22939UniProt:Q39241
Coordinates (TAIR10) chr1:-:17075264..17076256
Molecular Weight (calculated) 13123.00 Da
IEP (calculated) 4.94
GRAVY (calculated) 0.13
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGEGEVIAC HTLEVWNEKV KDANESKKLI VIDFTASWCP PCRFIAPVFA EMAKKFTNVV FFKIDVDELQ AVAQEFKVEA MPTFVFMKEG NIIDRVVGAA
101: KDEINEKLMK HGGLVASA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)