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AT1G44920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:23851315 (2013): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW1JeggNOG:ENOG4111ZN7EMBL:AC020576EMBL:AF370316EMBL:AY063101EMBL:CP002684EnsemblPlants:AT1G44920
EnsemblPlants:AT1G44920.1entrez:841058GeneID:841058GO:GO:0009507GO:GO:0016021Gramene:AT1G44920.1hmmpanther:PTHR35283
hmmpanther:PTHR35283:SF2IntAct:Q9LPD7InterPro:IPR021414KEGG:ath:AT1G44920OMA:GIFFYTCPfam:PF11255PhylomeDB:Q9LPD7
Proteomes:UP000006548RefSeq:NP_564492.1STRING:3702.AT1G44920.1TAIR:AT1G44920TCDB:9.B.185.1.4TMHMM:TMhelixUniGene:At.14888
UniGene:At.28268UniGene:At.70826UniProt:Q9LPD7
Coordinates (TAIR10) chr1:-:16983229..16984408
Molecular Weight (calculated) 27716.50 Da
IEP (calculated) 10.68
GRAVY (calculated) 0.14
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MRMLVLRTPT GPVSAVRFIT KSKPSPFSSP DSWLLPAPNT HRSRPRVVLA LSNPDGSVNS KPSTSASQIP SSGDETVFVG QDNVPLEGVI QFDKPSSTSS
101: SNITKWGRVA LLAGGDVLAL LIFSAIGRFS HGFPVFSLDT LHTADPFIAG WFLSAYFLGG YAEEGRGMKG KSKAVVAAAK SWIVGTPLGI IIRSASSGHI
201: PAYSFVLVTM GSTAVLLIGW RALLFSVLPT ESKKKDDTYR KGSAFELFEL LTSLIRRW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)