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AT1G44800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G08300.1); Has 4156 Blast hits to 4146 proteins in 764 species: Archae - 34; Bacteria - 2214; Metazoa - 4; Fungi - 0; Plants - 1218; Viruses - 0; Other Eukaryotes - 686 (source: NCBI BLink).
Protein Annotations
BioGrid:26269eggNOG:ENOG410ITDVeggNOG:ENOG410YBPNEMBL:AC020576EMBL:AY049306EMBL:AY085398EMBL:AY149964
EMBL:CP002684EnsemblPlants:AT1G44800EnsemblPlants:AT1G44800.1entrez:841044GeneID:841044Genevisible:Q9LPF1GO:GO:0003333
GO:GO:0005886GO:GO:0006865GO:GO:0015171GO:GO:0015807GO:GO:0016021GO:GO:0032973GO:GO:0034639
GO:GO:0043090GO:GO:0080144GO:GO:1902475Gramene:AT1G44800.1hmmpanther:PTHR31218hmmpanther:PTHR31218:SF12HOGENOM:HOG000237441
InParanoid:Q9LPF1IntAct:Q9LPF1InterPro:IPR000620InterPro:IPR030184iPTMnet:Q9LPF1KEGG:ath:AT1G44800OMA:ALIMRME
PANTHER:PTHR31218PaxDb:Q9LPF1Pfam:PF00892Pfam:Q9LPF1PhylomeDB:Q9LPF1PIR:A96507PRIDE:Q9LPF1
PRO:PR:Q9LPF1ProteinModelPortal:Q9LPF1Proteomes:UP000006548RefSeq:NP_175101.1STRING:3702.AT1G44800.1SUPFAM:0043518TAIR:AT1G44800
TMHMM:TMhelixUniGene:At.14882UniProt:Q9LPF1
Coordinates (TAIR10) chr1:-:16914342..16916858
Molecular Weight (calculated) 39949.80 Da
IEP (calculated) 9.89
GRAVY (calculated) 0.62
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGGSMEKIK PILAIISLQF GYAGMYIITM VSFKHGMDHW VLATYRHVVA TVVMAPFALM FERKIRPKMT LAIFWRLLAL GILEPLMDQN LYYIGLKNTS
101: ASYTSAFTNA LPAVTFILAL IFRLETVNFR KVHSVAKVVG TVITVGGAMI MTLYKGPAIE IVKAAHNSFH GGSSSTPTGQ HWVLGTIAIM GSISTWAAFF
201: ILQSYTLKVY PAELSLVTLI CGIGTILNAI ASLIMVRDPS AWKIGMDSGT LAAVYSGVVC SGIAYYIQSI VIKQRGPVFT TSFSPMCMII TAFLGALVLA
301: EKIHLGSIIG AVFIVLGLYS VVWGKSKDEV NPLDEKIVAK SQELPITNVV KQTNGHDVSG APTNGVVTST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)