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AT1G44780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08310.1); Has 18105 Blast hits to 11200 proteins in 808 species: Archae - 37; Bacteria - 1195; Metazoa - 7724; Fungi - 1727; Plants - 674; Viruses - 183; Other Eukaryotes - 6565 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH58eggNOG:ENOG4111NQTEMBL:AY800601EMBL:CP002684EMBL:DQ056485EnsemblPlants:AT1G44780EnsemblPlants:AT1G44780.1
entrez:841042ExpressionAtlas:Q5Q0F0GeneID:841042Gramene:AT1G44780.1hmmpanther:PTHR15410hmmpanther:PTHR15410:SF2HOGENOM:HOG000243851
InterPro:IPR019098ncoils:CoilOMA:SKPEMMGPfam:PF09649PhylomeDB:Q5Q0F0Proteomes:UP000006548RefSeq:NP_175099.2
SMART:SM01082TAIR:AT1G44780UniGene:At.14881UniGene:At.51189UniProt:Q5Q0F0
Coordinates (TAIR10) chr1:+:16909753..16912060
Molecular Weight (calculated) 52268.60 Da
IEP (calculated) 4.73
GRAVY (calculated) -1.14
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: METAEMNHNS GKSNLKNVDA TEIEFKILAA LRSRVTYLRN EADCFTLVSV RRMLEEDIGL EKCDLDVYKS FVKEHLVKCL EEAGNNDTSE NSQETEREDD
101: EIPTKEVAEQ SEEHEPMNDA GEENTSKREA KDVKGKGNKE TLQRDIKRAL RKRASYIKAN SETITMASLR RLLEEDLKLE KESLDLFKKF INKELDEVLQ
201: LPDAPKCSTE SIVKNVKKKV KSTPSKMVSS EYNSDSDTEG NVDNEEVAVK KTMARKVKLS KPEMMGKRKS ENGKQVSGRK KAKHTEIDSE NDSDSGDSEK
301: SLKQTKETAT DVYGKRVEHL KSVIKSCGMS VPPNIYKKAK QAPQEKREAM LIEELEQILA KEGLSSDPSA LEIKEVKKRK NISRELEGID TNNIVWNSRR
401: RSSTSFAPPP KPKVTAESES ESDEPEDSEN EEESNEKAER GSQSEEVEEE SNSEEDDGGE ESD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)