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AT1G44575.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
FP Images

Arabidopsis cell culture (peroxisomal marker)

At1g-GFP-44575
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chlorophyll A-B binding family protein
Curator
Summary (TAIR10)
Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation.
Computational
Description (TAIR10)
NONPHOTOCHEMICAL QUENCHING 4 (NPQ4); FUNCTIONS IN: chlorophyll binding, xanthophyll binding; INVOLVED IN: response to karrikin, nonphotochemical quenching; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, PSII associated light-harvesting complex II, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 242 Blast hits to 188 proteins in 60 species: Archae - 0; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 197; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G44575-MONOMERBioGrid:26258eggNOG:ENOG410IHNPeggNOG:ENOG4111VNIEMBL:AB015859EMBL:AC084807EMBL:AF134131
EMBL:CP002684EnsemblPlants:AT1G44575EnsemblPlants:AT1G44575.1entrez:841033ExpressionAtlas:Q9XF91Gene3D:1.10.3460.10GeneID:841033
Genevisible:Q9XF91GO:GO:0009507GO:GO:0009517GO:GO:0009523GO:GO:0009534GO:GO:0009535GO:GO:0009579
GO:GO:0010027GO:GO:0010196GO:GO:0015979GO:GO:0016020GO:GO:0016021GO:GO:0016168GO:GO:0051738
GO:GO:0080167hmmpanther:PTHR14154hmmpanther:PTHR14154:SF10HOGENOM:HOG000238511InParanoid:Q9XF91InterPro:IPR022796InterPro:IPR023329
KEGG:ath:AT1G44575KO:K03542OMA:DKAVIQPPaxDb:Q9XF91PDB:2AUIPDB:2AVLPDBsum:2AUI
PDBsum:2AVLPfam:PF00504Pfam:Q9XF91PhylomeDB:Q9XF91PIR:T52313PRIDE:Q9XF91PRO:PR:Q9XF91
ProteinModelPortal:Q9XF91Proteomes:UP000006548RefSeq:NP_175092.1SMR:Q9XF91STRING:3702.AT1G44575.1SUPFAM:0043399SUPFAM:SSF103511
TAIR:AT1G44575tair10-symbols:NPQ4tair10-symbols:PSBSUniGene:At.21534UniGene:At.27004UniGene:At.49230UniProt:Q56XH2
UniProt:Q9XF91
Coordinates (TAIR10) chr1:+:16871768..16873194
Molecular Weight (calculated) 28009.50 Da
IEP (calculated) 10.00
GRAVY (calculated) 0.28
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQTMLLTSG VTAGHFLRNK SPLAQPKVHH LFLSGNSPVA LPSRRQSFVP LALFKPKTKA APKKVEKPKS KVEDGIFGTS GGIGFTKANE LFVGRVAMIG
101: FAASLLGEAL TGKGILAQLN LETGIPIYEA EPLLLFFILF TLLGAIGALG DRGKFVDDPP TGLEKAVIPP GKNVRSALGL KEQGPLFGFT KANELFVGRL
201: AQLGIAFSLI GEIITGKGAL AQLNIETGIP IQDIEPLVLL NVAFFFFAAI NPGNGKFITD DGEES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)