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AT1G44446.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain
Curator
Summary (TAIR10)
Encodes chlorophyllide <i>a</i> oxygenase which converts chlorophyllide <i>a</i> to chlorophyllide <i>b</i> by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide <i>a</i> . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll <i>b</i> and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22.
Computational
Description (TAIR10)
CHLORINA 1 (CH1); CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site (InterPro:IPR015881), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: translocon at the inner envelope membrane of chloroplasts 55-II (TAIR:AT2G24820.1); Has 6355 Blast hits to 6353 proteins in 945 species: Archae - 23; Bacteria - 4238; Metazoa - 95; Fungi - 51; Plants - 426; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G44446-MONOMERBioCyc:ARA:GQT-2376-MONOMERBioCyc:ARA:GQT-2377-MONOMERBioCyc:MetaCyc:AT1G44446-MONOMERBioGrid:26254BRENDA:1.14.13.122EC:1.14.13.122
eggNOG:COG4638eggNOG:ENOG410IDZ7EMBL:AB021316EMBL:AB030565EMBL:AC084807EMBL:AF177200EMBL:AK228645
EMBL:AY128357EMBL:BT002075EMBL:CP002684EnsemblPlants:AT1G44446EnsemblPlants:AT1G44446.1entrez:841029Gene3D:2.102.10.10
GeneID:841029Genevisible:Q9MBA1GO:GO:0005506GO:GO:0009507GO:GO:0009535GO:GO:0009706GO:GO:0010277
GO:GO:0015995GO:GO:0016705GO:GO:0042651GO:GO:0051537gramene_pathway:1.13.12.14gramene_pathway:PWY-5068hmmpanther:PTHR21266
hmmpanther:PTHR21266:SF19HOGENOM:HOG000012389InParanoid:Q9MBA1InterPro:IPR013626InterPro:IPR015881InterPro:IPR017941KEGG:ath:AT1G44446
KO:K13600ncoils:CoilOMA:TIMILHDPaxDb:Q9MBA1Pfam:PF00355Pfam:PF08417Pfam:Q9MBA1
Pfscan:PS51296PhylomeDB:Q9MBA1PIR:T52458PRIDE:Q9MBA1PRO:PR:Q9MBA1PROSITE:PS51296ProteinModelPortal:Q9MBA1
Proteomes:UP000006548RefSeq:NP_175088.1RefSeq:NP_973969.1RefSeq:NP_973970.1scanprosite:PS00570SMR:Q9MBA1STRING:3702.AT1G44446.1
SUPFAM:SSF50022SUPFAM:SSF55961TAIR:AT1G44446tair10-symbols:ATCAOtair10-symbols:CAOtair10-symbols:CH1UniGene:At.19047
UniPathway:UPA00668UniProt:Q9MBA1
Coordinates (TAIR10) chr1:-:16848664..16851152
Molecular Weight (calculated) 60333.90 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.28
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MNAAVFSPSA LSLPISFSKT RSSFLSRKKG VKGEFRVFAV FGDESGLVEK KSQWRPLFDV EDPRSKAPPY KGKFLDVNQA IEVARFDIQY LDWRARQDLL
101: TIMILHDKVV DVLNPLAREY KSIGTVKKEL AGLQEELSKA HQQVHISEAR VSTALDKLAH MEELVNDRLL PGRVVTELDK PSSSTTASAV ELDREKTNTG
201: AKSLNVSGPV PPYSPHLKNF WYPVAFTADL KHDTMVPIEC FEQPWVIFRG EDGKPGCVRN TCAHRACPLD LGTVNEGRIQ CPYHGWEYST DGECKKMPST
301: KLLKVKIKSL PCLEQEGMIW IWPGDEPPAP ILPSLQPPSG FLIHAELVMD LPVEHGLLLD NLLDLAHAPF THTSTFAKGW SVPSLVKFLT PTSGLQGYWD
401: PYPIDMEFKP PCIVLSTIGI SKPGKLEGKS TQQCATHLHQ LHVCLPSSKN KTRLLYRMSL DFAPILKNLP FMEHLWRHFA EQVLNEDLRL VLGQQERMLN
501: GANIWNLPVA YDKLGVRYRL WRNAVDRGDD KLPFSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)