AT1G44160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.941 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HSP40/DnaJ peptide-binding protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HSP40/DnaJ peptide-binding protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: HSP40/DnaJ peptide-binding protein (TAIR:AT1G11040.1); Has 12682 Blast hits to 12678 proteins in 3092 species: Archae - 108; Bacteria - 7085; Metazoa - 1071; Fungi - 625; Plants - 733; Viruses - 2; Other Eukaryotes - 3058 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:16795032..16796276 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40071.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.30 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||
| Length | 357 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATQGMAQPS AKKRSFLLRD LFKLCRSISR VLPRDKTKHH HKAKHDTKET KRLDEEHKRN TPNAFEFRET KGIGKNNKVE GVSLCKVRSY RFDNTNTNFV 101: GSKKSLSRSC SQNTATATST NPTLRSLSFI GRSKSSSNRM TESGGFMPTL MRSTTTVPRS FANPILYSSS SAKVAKPSPT EKKLRCTLEE LCNGCTKKIK 201: IKRDVITSLG EKCEEEEMVE IKVKPGWKGG TKVTFEGKGN EAMRSVPADL TFVIVEKEHE VFKREGDDLE MAVEVSLLEA LTGCELSVAL LDGDNMRLRI 301: EDVIHPGYVT VVQGKGMPNL KEKGKRGDLR VRFRTKFPQH LTDEQRAEIH SILQDSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)