AT1G44120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.617 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G77460.2); Has 2932 Blast hits to 1598 proteins in 201 species: Archae - 2; Bacteria - 13; Metazoa - 467; Fungi - 147; Plants - 2069; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:16780610..16787414 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 230867.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.07 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||
| Length | 2114 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTSEMDDPEK AAVTITRLIE QLHAKKSSAQ EKELSTARLL GLAKGKKECR KIISQNVNAM PAFISLLRSG TLLAKLNSAS VLTVLCKDKN VRSKILIGGC 0101: IPPLLSLLKS DSVDAKRVVA EAIYEVSLCG MDGDNVGTKI FVTEGVVPSL WDQLKTGKKQ DKTVEGHLVG ALRNLCGDKD GFWALTLEDG GVDIILKLLQ 0201: SSNPVSQSNA ASLLARLIRI FTSSISKVEE SGAVQVLVQL LGEENSVFVR ASVVNALEAI TSKSEEAITV ARDLDGIHLL ISAVVASSKE SVEEETERVL 0301: QSYGTQALAN LCGGMSGLIV YLGGLSLSPR LTEPIADILG ALAYALRKFQ LSCGDTREAF DPTLTEGILV KLLKPRDTQL IHERILEAME SLFGNVDLSK 0401: LLNNVDAKRV LVCLTILATD GPRERMITCL SNLCKHGDVW DAIGKREGIQ ILIPYLGLSS EQHQELSVEF LAILTDNVEE SRWAVTSAGG IPPLLQILET 0501: GVSQKAKDDA VRVILNLCCH SEEIRLCVEK AGAIPALLGL LKNGGPKSQE SSANTLLKLI KTADPSVIEQ VQALFLGDAP KSKTHLIRVL GHVLASASLE 0601: EFVTKGSAAN NGLRSLVQRL ASSNEKMKEN AASVLADLFS SRKDLCGGLG FDEDDNPCTK LLSGNTHAVA TQLAHALGSL SNPTKKKTAT KKLSGPEVEV 0701: IKPLIKSAKT NPIESTENPM STLANLLSDP NVAAEALNDD VVSALTRVLR EGTLQGKRNA SHALHQLLKH FQVSDVFKGN EQCRFAVSEL IDLLNATDLN 0801: NSAFIDVLEV LSLLAKAKYG ANLSHNPFSA FGEVPSNLDS LVRGLAEGHP LVQDKAIEIL SRFCKTQFIL LGRLLVTQSK SISSLANRTI NSSSPEIKVG 0901: GAILLVCAAK NDITLWAEAV EQSGYLKTLV NTLLDMSKQN SKSASYGIEI QRPRSFITSN LCLRMDDSEM VDPVTILGST ASMWLLSIIC SSHPSNRLVV 1001: MEGNGLEIIA ENLQRNKSNT QENSSDSEEK WIAMSFLAVM SQEPKVVSSP ATENILQTLA PFMQSEQMID GYFTAQVLAA LVRHKNDKTI SEIMNSDIVE 1101: TTINLVGCEE SDTRSLCALA EELSLVQNPY EATLEVLFEN ERVRSGSFTK KCIPLLVNLL KPYADKVGGI PVAIRLLRRI ADNDDLSKLL IAEAGALDAL 1201: AKYLSLSPQD STEITVSELL ESLFRSPEIT RHKTAISSMK QLIGILHLAS RSTRYNAARV LCELFSSEHI RDSELAWKAL SPLIEMLNTT LESERVAALT 1301: ALVKLTMGIN PRPDILTSLE GNPLDNIYKI LSLDSSSLES KTSAARICRF LFTNEGLRTS TSAACCIVSL ISLIRTGKST AIEAGMFALD RLLDIKRFVE 1401: VAEEHDCVNL FYGYVASENY LISEAAISCL TKMAKDNTPR KMDLIKMGII EKCISQLSKS PPSSLCSVIA DLFRVLTNVG VIARSQDAIK MVQPLLLILL 1501: RQDLDFQGQL GGLQAIANIL EKPMVLESLK IASSTIIMPL IPLLESESIA VKNATTILLT SLLEMQRFQE EITTKNLIAP LVKLVGIRVR NLQEIALMGL 1601: ERSSVTWPKE VADTGGIQEL SKVIIDEDPQ LPVYLWESAA FILCNILRIN PEHYYFTVTI PVLSKMLFST AESTVILAID ALIIRENQDS SSVQEMAESS 1701: ALDALLDLLR SHHCEELSAR LLELILRNPK VRETKICQFV LTPLSEYILD PDTISESAKI LIAMALGDIS QHEGLAKATD SPVACRALIS LLEDEPSEEM 1801: QMVVMRALEN FAMHSRTSRK AMAEAGGVYW VQEMLRSSNP QVSTQAALII KSLFSNHTLQ EYVSGEIIKS LTNAMEREFW TTTAINVEIV RTLNTILTTF 1901: PKLRSSEAAT ACIPHLIGAL KSGEQEARDS AMDTIYTLRQ SWTTMPTETA RSQAVLAADA IPVLQLMMKS KLKSPAPSSF HERGNSLLNC LPGSLTVAIK 2001: RGDNLKRSNA FCRLIIDNCP TKKTKVVKRS SSPVWKESFT WDFAAPPRGQ FLEIVCKSNN IFRNKNLGKV RIPIDKVLSE GSYSGIFKLN DESKKDNSSD 2101: RSLEIEIVWS NQSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)