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AT1G44120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.807
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G77460.2); Has 2932 Blast hits to 1598 proteins in 201 species: Archae - 2; Bacteria - 13; Metazoa - 467; Fungi - 147; Plants - 2069; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AC074228EMBL:CP002684EnsemblPlants:AT1G44120EnsemblPlants:AT1G44120.1entrez:841015
Gene3D:1.25.10.10Gene3D:2.60.40.150GeneID:841015Gramene:AT1G44120.1hmmpanther:PTHR23315hmmpanther:PTHR23315:SF135HOGENOM:HOG000029638
InterPro:IPR000008InterPro:IPR000225InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT1G44120ncoils:CoilOMA:RERMITC
Pfam:PF00168PhylomeDB:Q9C6Y4PIR:E96505Proteomes:UP000006548RefSeq:NP_175078.1SMART:SM00185SMART:SM00239
SMR:Q9C6Y4STRING:3702.AT1G44120.1SUPFAM:SSF48371SUPFAM:SSF49562TAIR:AT1G44120UniGene:At.38851UniProt:Q9C6Y4
Coordinates (TAIR10) chr1:+:16780610..16787414
Molecular Weight (calculated) 230867.00 Da
IEP (calculated) 6.07
GRAVY (calculated) 0.04
Length 2114 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTSEMDDPEK AAVTITRLIE QLHAKKSSAQ EKELSTARLL GLAKGKKECR KIISQNVNAM PAFISLLRSG TLLAKLNSAS VLTVLCKDKN VRSKILIGGC
0101: IPPLLSLLKS DSVDAKRVVA EAIYEVSLCG MDGDNVGTKI FVTEGVVPSL WDQLKTGKKQ DKTVEGHLVG ALRNLCGDKD GFWALTLEDG GVDIILKLLQ
0201: SSNPVSQSNA ASLLARLIRI FTSSISKVEE SGAVQVLVQL LGEENSVFVR ASVVNALEAI TSKSEEAITV ARDLDGIHLL ISAVVASSKE SVEEETERVL
0301: QSYGTQALAN LCGGMSGLIV YLGGLSLSPR LTEPIADILG ALAYALRKFQ LSCGDTREAF DPTLTEGILV KLLKPRDTQL IHERILEAME SLFGNVDLSK
0401: LLNNVDAKRV LVCLTILATD GPRERMITCL SNLCKHGDVW DAIGKREGIQ ILIPYLGLSS EQHQELSVEF LAILTDNVEE SRWAVTSAGG IPPLLQILET
0501: GVSQKAKDDA VRVILNLCCH SEEIRLCVEK AGAIPALLGL LKNGGPKSQE SSANTLLKLI KTADPSVIEQ VQALFLGDAP KSKTHLIRVL GHVLASASLE
0601: EFVTKGSAAN NGLRSLVQRL ASSNEKMKEN AASVLADLFS SRKDLCGGLG FDEDDNPCTK LLSGNTHAVA TQLAHALGSL SNPTKKKTAT KKLSGPEVEV
0701: IKPLIKSAKT NPIESTENPM STLANLLSDP NVAAEALNDD VVSALTRVLR EGTLQGKRNA SHALHQLLKH FQVSDVFKGN EQCRFAVSEL IDLLNATDLN
0801: NSAFIDVLEV LSLLAKAKYG ANLSHNPFSA FGEVPSNLDS LVRGLAEGHP LVQDKAIEIL SRFCKTQFIL LGRLLVTQSK SISSLANRTI NSSSPEIKVG
0901: GAILLVCAAK NDITLWAEAV EQSGYLKTLV NTLLDMSKQN SKSASYGIEI QRPRSFITSN LCLRMDDSEM VDPVTILGST ASMWLLSIIC SSHPSNRLVV
1001: MEGNGLEIIA ENLQRNKSNT QENSSDSEEK WIAMSFLAVM SQEPKVVSSP ATENILQTLA PFMQSEQMID GYFTAQVLAA LVRHKNDKTI SEIMNSDIVE
1101: TTINLVGCEE SDTRSLCALA EELSLVQNPY EATLEVLFEN ERVRSGSFTK KCIPLLVNLL KPYADKVGGI PVAIRLLRRI ADNDDLSKLL IAEAGALDAL
1201: AKYLSLSPQD STEITVSELL ESLFRSPEIT RHKTAISSMK QLIGILHLAS RSTRYNAARV LCELFSSEHI RDSELAWKAL SPLIEMLNTT LESERVAALT
1301: ALVKLTMGIN PRPDILTSLE GNPLDNIYKI LSLDSSSLES KTSAARICRF LFTNEGLRTS TSAACCIVSL ISLIRTGKST AIEAGMFALD RLLDIKRFVE
1401: VAEEHDCVNL FYGYVASENY LISEAAISCL TKMAKDNTPR KMDLIKMGII EKCISQLSKS PPSSLCSVIA DLFRVLTNVG VIARSQDAIK MVQPLLLILL
1501: RQDLDFQGQL GGLQAIANIL EKPMVLESLK IASSTIIMPL IPLLESESIA VKNATTILLT SLLEMQRFQE EITTKNLIAP LVKLVGIRVR NLQEIALMGL
1601: ERSSVTWPKE VADTGGIQEL SKVIIDEDPQ LPVYLWESAA FILCNILRIN PEHYYFTVTI PVLSKMLFST AESTVILAID ALIIRENQDS SSVQEMAESS
1701: ALDALLDLLR SHHCEELSAR LLELILRNPK VRETKICQFV LTPLSEYILD PDTISESAKI LIAMALGDIS QHEGLAKATD SPVACRALIS LLEDEPSEEM
1801: QMVVMRALEN FAMHSRTSRK AMAEAGGVYW VQEMLRSSNP QVSTQAALII KSLFSNHTLQ EYVSGEIIKS LTNAMEREFW TTTAINVEIV RTLNTILTTF
1901: PKLRSSEAAT ACIPHLIGAL KSGEQEARDS AMDTIYTLRQ SWTTMPTETA RSQAVLAADA IPVLQLMMKS KLKSPAPSSF HERGNSLLNC LPGSLTVAIK
2001: RGDNLKRSNA FCRLIIDNCP TKKTKVVKRS SSPVWKESFT WDFAAPPRGQ FLEIVCKSNN IFRNKNLGKV RIPIDKVLSE GSYSGIFKLN DESKKDNSSD
2101: RSLEIEIVWS NQSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)