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AT1G44000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:26225eggNOG:ENOG410IUBIeggNOG:ENOG4111UAIEMBL:AC022314EMBL:AY045870EMBL:AY091453EMBL:CP002684
EnsemblPlants:AT1G44000EnsemblPlants:AT1G44000.1entrez:841000GeneID:841000Genevisible:Q94AQ9GO:GO:0009507GO:GO:0009658
Gramene:AT1G44000.1hmmpanther:PTHR31750hmmpanther:PTHR31750:SF2HOGENOM:HOG000243267InParanoid:Q94AQ9IntAct:Q94AQ9InterPro:IPR024438
KEGG:ath:AT1G44000OMA:GPNLMLDPaxDb:Q94AQ9Pfam:PF12638Pfam:Q94AQ9PhylomeDB:Q94AQ9PRIDE:Q94AQ9
PRO:PR:Q94AQ9Proteomes:UP000006548RefSeq:NP_564489.1STRING:3702.AT1G44000.1TAIR:AT1G44000UniGene:At.19660UniProt:Q94AQ9
Coordinates (TAIR10) chr1:-:16708201..16709521
Molecular Weight (calculated) 29893.90 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.24
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MACYIVPYYH HPVLSHPNRE IFSHRHHHHH RFCNNLLNRR ISVPRSSAIS DGGVSYNTLV SEAVRLLVPQ ANFDSSKLKV EFLGELLENK SNGGIITPRT
101: YILSHCDFTA NLTLTISNVI NLDQLEGWYK KDDVVAEWKK VNDELRLHIH CCVSGMSLLQ DVAAELRYHI FSKELPLVLK AVVHGDSVMF RENPELMDAY
201: VWVYFHSSTP KYNRIECWGP LKDAAKGKQQ GNHQGFLSST TSRKLIRHKS IFHTLFTFLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)