AT1G43910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G05380.1); Has 21538 Blast hits to 20075 proteins in 2875 species: Archae - 1244; Bacteria - 8173; Metazoa - 2975; Fungi - 2572; Plants - 2413; Viruses - 32; Other Eukaryotes - 4129 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:16656050..16657628 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54240.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 475 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATLYSQVPS VSAVFSLYTS FSAITMLFRT ILNEIVPKRI REYIAMKAVD FFSSYFQSDF TFVIEQRWEF VENQTFRAAE VYLPTCLAGL STGKLLVGSS 101: NLKNPAAEPK LGIPVNTKII DNFEGIHLEW TLHSVETKKY LPEKRYFHLT CKKEFREKIM TDYFTYLAKS AEKIMSHREN LKIYTYNQDR SKWESAIFEH 201: HTTFETLAVE PDLKKTLIDD LDAFSKGKDF FKSVGRAWKR GYLLYGPPGT GKSSMVAAIA NHMKYHIYDL QIQSVRDDGE LREILTSTKN RSILLIEDID 301: CGADASRRRQ SKKKEEDGGE DDGEPQKRKK KFEVGISLSG LLNFVDGLWS SCGEEKIIIF TTNHKEKLDP ALLRPGRMDV HILMDNCTPF VFKKLVALYL 401: KTDEHVLFDP IEKLILEVSS TPAEVTQQLM ASKNADIALK GLAEFLENKK LKKGEDSSVE EEGEIEDAET KEAET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)