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AT1G43860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.509
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sequence-specific DNA binding transcription factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sequence-specific DNA binding transcription factors; CONTAINS InterPro DOMAIN/s: Ribosome maturation protein SBDS, C-terminal (InterPro:IPR018978), Ribosome maturation protein SBDS (InterPro:IPR002140), Ribosome maturation protein SBDS, N-terminal (InterPro:IPR019783), Ribosome maturation protein SBDS, conserved site (InterPro:IPR018023); Has 1053 Blast hits to 1042 proteins in 349 species: Archae - 219; Bacteria - 2; Metazoa - 264; Fungi - 287; Plants - 65; Viruses - 0; Other Eukaryotes - 216 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1500eggNOG:KOG2785eggNOG:KOG2917EMBL:AC006423EMBL:AY054529EMBL:BT008459EMBL:CP002684
EnsemblPlants:AT1G43860EnsemblPlants:AT1G43860.1entrez:840982Gene3D:3.30.1250.10GeneID:840982GO:GO:0003700GO:GO:0006355
GO:GO:0042256Gramene:AT1G43860.1hmmpanther:PTHR10927hmmpanther:PTHR10927:SF1InterPro:IPR002140InterPro:IPR003604InterPro:IPR018023
InterPro:IPR018978InterPro:IPR019783KEGG:ath:AT1G43860KO:K14574OMA:LHSCEERPANTHER:PTHR10927:SF1Pfam:PF01172
Pfam:PF09377PhylomeDB:Q9MAR2PIR:E96502PRO:PR:Q9MAR2PROSITE:PS01267Proteomes:UP000006548RefSeq:NP_564488.1
scanprosite:PS01267SMART:SM00451SMR:Q9MAR2STRING:3702.AT1G43860.1SUPFAM:SSF109728SUPFAM:SSF57667SUPFAM:SSF89895
TAIR:AT1G43860TIGRfam:TIGR00291TIGRFAMs:TIGR00291UniGene:At.12064UniProt:Q9MAR2
Coordinates (TAIR10) chr1:-:16622244..16624385
Molecular Weight (calculated) 42233.40 Da
IEP (calculated) 7.38
GRAVY (calculated) -0.71
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKTLVQPVG QKRLTNVAVV RLKKQGNRFE IACYKNKVLS WRSGVEKDID EVLQSHTVYS NVSKGVLAKS KDLMKSFGSD DHTKICIDIL EKGELQVAGK
101: ERESQFSSQF RDIATIVMQK TINPETQRPY TISMVERLMH EIHFAVDPHS NSKKQALDVI RELQKHFPIK RSPMRLRLTV PVQNFPSLLE KLKEWDGSVV
201: SKDESGTQMS TVCEMEPGLF RECDSHVRSI QGRLEILAVS VHAEGDTSMD HYDEHDDMAL QTHKPLLPAE TETKDLTDPV VELSKKLQKQ EISTTDNIKQ
301: EGGEEKKGTK CSTCNTFVGE AKQYREHCKS DWHKHNLKRK TRKLPPISAD ECMSEIDMDD SRADLKDYSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)