AT1G43770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G02890.1); Has 457 Blast hits to 390 proteins in 97 species: Archae - 0; Bacteria - 8; Metazoa - 145; Fungi - 60; Plants - 182; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:16548509..16549907 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40759.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||
| Length | 371 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLHVKGPVC QTCGDIGFEE ALVFCDSCMF ESIHRYCLGI TPIPFTEYIT WICEDCDNSE SDSDCNEVDQ TVKKKKKSRN QPLVVLAEDN VLQEPLEGSK 101: REESSCSRKP HELTCLDGNG ESVLEAADSS SVPDHSSCTS KRKEVDQTAN LGHILERSEK KKKKKKKKKS INHSPPVLAV EDHELQGTTN VVEPVEVSSS 201: SPTKETMESK RQESSDSRKP HELTCLVGDS ETANSSSVPE HNSCAVKKRK LSSGNKQIQL ADGSSSCRVA ESNMPLTLTS RNYRAQPIKI PIWRGLMSVK 301: GGNSCTMDGI VAHVSSLACP KVHETASSLK GRLSAEILPR LEVWPKTFLK NGGPKDESVA LFFFPSSERC T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)