AT1G43760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAse I-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G40390.1); Has 1816 Blast hits to 1744 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 164; Fungi - 4; Plants - 1633; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:16528880..16531065 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 70565.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.91 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||
| Length | 626 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSVKRCIKI LKLWHLLPEI TPSLRQNISG YNIFDWKGRV RSRSKKRSSS TPPRLITSQN CVKGKNIEIV PSTVLVEAGQ SYAKGSAWVK KSTTGVARSP 101: VKPPESHLPE SVLVSAIPSE DSFPYPPGWG AMSSKSRKRW RHKWNISRSS AADHISKVSG SPRALVSGGS SSESNAPAIL DSTLPSWRLD TNYCCSELGR 201: IWIVWDPSVS VLVFKKTDQL MILVGDFDQI AATSDHYSVL QTSIPMRGLE EFQNCLRDSD LVDIPSRGVH YTWSNHQDDN PIIRKLDRAI ANGDWFSSFP 301: SAIAVFELSG VSDHSPCIII LENLPKRSKK CFRYFSFLST HPTFLVSLTV AWEEQIPVGS HMFSLGEHLK AAKKCCKLLN RQGFGNIQHK TKEALDSLES 401: IQSQLLTNPS DSLFRVEHVA RKKWNFFAAA LESFYRQKSR IKWLQDGDAN TRFFHKVILA NQAKNLIKFL RMDDDVRVEN VTQVKEMIVA YYTHLLGSDS 501: DILTPDSVQR IKDIHPFRCN DTLASRLSAL PSDKEITAAV FAMPRNKAPG PDSFTAEFFW ESWFVVKDST IAAVKEFFRT GHLLKRFNAT AITLIPKVTG 601: VDQLSMFRPV SCCTVVYKII TDNTRF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)